Evidence map›Paper›PMID 31960620›Full record

ArticleMolecular genetics & genomic medicine2020

Copy number variation in DRC1 is the major cause of primary ciliary dyskinesia in the Japanese population.

Kazuhiko Takeuchi, Yifei Xu, Masako Kitano, Kazuki Chiyonobu, Miki Abo, Koji Ikegami, Satoru Ogawa, Makoto Ikejiri, Mitsuko Kondo, Shimpei Gotoh and 3 more

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 42 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 1 country.

Kazuhiko TakeuchiDepartment of Otorhinolaryngology, Head & Neck Surgery, Mie University Graduate School of Medicine, Tsu, Japan.ORCID 0000-0001-6855-6425
Yifei XuDepartment of Otorhinolaryngology, Head & Neck Surgery, Mie University Graduate School of Medicine, Tsu, Japan.ORCID 0000-0002-0373-6772
Masako KitanoDepartment of Otorhinolaryngology, Head & Neck Surgery, Mie University Graduate School of Medicine, Tsu, Japan.
Kazuki ChiyonobuDepartment of Otorhinolaryngology, Head & Neck Surgery, Mie University Graduate School of Medicine, Tsu, Japan.
Miki AboDepartment of Respiratory Medicine, Kanazawa University, Kanazawa, Japan.
Koji IkegamiDepartment of Anatomy and Developmental Biology, Graduate School of Biomedical and Health Sciences, Hiroshima University, Hiroshima, Japan.
Satoru OgawaElectron Microscopy Research Center, Mie University Graduate School of Medicine, Tsu, Japan.
Makoto IkejiriDepartment of Central Laboratories, Mie University Hospital, Tsu, Japan.
Mitsuko KondoDepartment of Respiratory Medicine, Tokyo Women's Medical University, Tokyo, Japan.
Shimpei GotohDepartment of Drug Discovery for Lung Diseases, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Mizuho NagaoInstitute for Clinical Research, National Hospital Organization Mie National Hospital, Tsu, Japan.
Takao FujisawaInstitute for Clinical Research, National Hospital Organization Mie National Hospital, Tsu, Japan.
Kaname NakataniDepartment of Genomic Medicine, Mie University Hospital, Tsu, Japan.
Mie University · JPMie University Hospital · JPNational Mie Hospital · JPHiroshima University · JPKanazawa University · JPKyoto University · JPTokyo Women's Medical University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPrimary ciliary dyskinesia (PCD) is a rare genetic disorder caused by functional impairment of cilia throughout the body. The involvement of copy number variation (CNV) in the development of PCD is largely unknown.

methodsWe examined 93 Japanese patients with clinically suspected PCD from 84 unrelated families. CNV was examined either by exome sequencing of a PCD gene panel or by whole-exome sequencing (WES). The identified alterations were validated by PCR and Sanger sequencing. Nasal ciliary ultrastructure was examined by electron microscopy.

resultsAnalysis of CNV by the panel or WES revealed a biallelic deletion in the dynein regulatory complex subunit 1 (DRC1) gene in 21 patients, which accounted for 49% of the PCD patients in whom a disease-causing gene was found. Sanger sequencing of the PCR product revealed a 27,748-bp biallelic deletion including exons 1-4 of DRC1 with identical breakpoints in all 21 patients. The ciliary ultrastructure of the patients with this CNV showed axonemal disorganization and the loss or gain of central microtubules.

conclusionThe deletion of DRC1 is the major cause of PCD in Japan and this alteration can cause various ciliary ultrastructural abnormalities.

Indexed as

DNA Copy Number VariationsAdolescentAdultChildChild, PreschoolCiliaCiliary Motility DisordersFemaleHumansInfantJapanMaleMicrotubule-Associated ProteinsMicrotubulesMiddle AgedNasal MucosaDRC1 protein, humanMicrotubule-Associated Proteinscopy number variationDRC1ultrastructure

Identifiers

PMID31960620
PMCPMC7057087
OpenAlexW3003570192

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.