Evidence map›Paper›PMID 31959966›Full record

ArticleNature chemical biology2020

Molecular basis for receptor tyrosine kinase A-loop tyrosine transphosphorylation.

Lingfeng Chen, William M Marsiglia, Huaibin Chen, Joseph Katigbak, Hediye Erdjument-Bromage, David J Kemble, Lili Fu, Jinghong Ma, Gongqin Sun, Yingkai Zhang and 5 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
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  11. FGF-based drug discovery: advances and challenges.Nature reviews. Drug discovery · 2025
    Review
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  14. Electrical Forces Improve Memory in Old Age.Reviews of physiology, biochemistry and pharmacology · 2025
    Review
  15. Review
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 2 countries.

Lingfeng Chen *School of Chemical Engineering, Nanjing University of Science and Technology, Nanjing, China.ORCID http://orcid.org/0000-0003-0089-6559
William M Marsiglia *Department of Chemistry, New York University, New York, NY, USA.
Huaibin Chen *Department of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY, USA.
Joseph KatigbakDepartment of Chemistry, New York University, New York, NY, USA.
Hediye Erdjument-BromageDepartment of Cell Biology and Skirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, NY, USA.
David J KembleDepartment of Cell and Molecular Biology, University of Rhode Island, Kingston, RI, USA.
Lili FuDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY, USA.
Jinghong MaDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY, USA.
Gongqin SunDepartment of Cell and Molecular Biology, University of Rhode Island, Kingston, RI, USA.
Yingkai ZhangDepartment of Chemistry, New York University, New York, NY, USA.ORCID http://orcid.org/0000-0002-4984-3354
Guang LiangSchool of Chemical Engineering, Nanjing University of Science and Technology, Nanjing, China.
Thomas A NeubertDepartment of Cell Biology and Skirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, NY, USA.
Xiaokun LiChemical Biology Research Center, School of Pharmaceutical Sciences, Wenzhou Medical University, Wenzhou, Zhejiang, China.
Nathaniel J TraasethDepartment of Chemistry, New York University, New York, NY, USA. traaseth@nyu.edu.ORCID http://orcid.org/0000-0002-1185-6088
Moosa MohammadiDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY, USA. moosa.mohammadi@nyulangone.org.ORCID http://orcid.org/0000-0003-2434-9437
New York University · USWenzhou Medical University · CNUniversity of Rhode Island · US

Funding

MECHANISMS OF FGF RECEPTOR REGULATION AND SIGNALINGR01DE013686 · NIDCR · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI MOHAMMADI, MOOSA · 2000 to 2020
$12.3M
Protein Mass Spectrometry Core Facility for NeuroscienceP30NS050276 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NEUBERT, THOMAS A · 2005 to 2015
$7.9M
Computational modulator design and machine learning to target protein-protein interactionsR35GM127040 · NIGMS · NEW YORK UNIVERSITY · PI Yingkai Zhang · 2018 to 2026
$4.6M
FGF Receptor Structure, Dynamics and FunctionR01GM117118 · NIGMS · NEW YORK UNIVERSITY · PI TRAASETH, NATHANIEL J. · 2017 to 2020
$1.3M
LTQ-Orbitrap Mass Spectrometer.S10RR027990 · NCRR · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NEUBERT, THOMAS A · 2011 to 2011
$600k
Acquisition of a Cryoprobe for a 600 MHz NMR SpectrometerS10OD016343 · OD · NEW YORK UNIVERSITY · PI KROGSGAARD, MICHELLE, TRAASETH, NATHANIEL J. · 2014 to 2014
$360k
Mechanisms of resistance and activation conferred by kinases displaying hinge and gate-keeper mutationsF99CA212474 · NCI · NEW YORK UNIVERSITY · PI MARSIGLIA, WILLIAM M · 2016 to 2017
$89k
NCI NIH HHS F99 CA212474NCRR NIH HHS S10 RR027990NIDCR NIH HHS R01 DE013686NIGMS NIH HHS R01 GM117118NIGMS NIH HHS R35 GM127040NIH HHS S10 OD016343NINDS NIH HHS P30 NS050276
6 · The paper itself

Abstract

A long-standing mystery shrouds the mechanism by which catalytically repressed receptor tyrosine kinase domains accomplish transphosphorylation of activation loop (A-loop) tyrosines. Here we show that this reaction proceeds via an asymmetric complex that is thermodynamically disadvantaged because of an electrostatic repulsion between enzyme and substrate kinases. Under physiological conditions, the energetic gain resulting from ligand-induced dimerization of extracellular domains overcomes this opposing clash, stabilizing the A-loop-transphosphorylating dimer. A unique pathogenic fibroblast growth factor receptor gain-of-function mutation promotes formation of the complex responsible for phosphorylation of A-loop tyrosines by eliminating this repulsive force. We show that asymmetric complex formation induces a more phosphorylatable A-loop conformation in the substrate kinase, which in turn promotes the active state of the enzyme kinase. This explains how quantitative differences in the stability of ligand-induced extracellular dimerization promotes formation of the intracellular A-loop-transphosphorylating asymmetric complex to varying extents, thereby modulating intracellular kinase activity and signaling intensity.

Indexed as

AAA DomainCatalytic DomainDimerizationEnzyme ActivationHumansLigandsPhosphorylationProtein BindingProtein ConformationProtein-Tyrosine KinasesReceptor, Fibroblast Growth Factor, Type 1Receptor, Fibroblast Growth Factor, Type 2Receptor, Fibroblast Growth Factor, Type 3Receptor Protein-Tyrosine KinasesSignal TransductionStructure-Activity RelationshipFGFR1 protein, humanFGFR2 protein, humanFGFR3 protein, humanLigandsProtein-Tyrosine KinasesReceptor, Fibroblast Growth Factor, Type 1Receptor, Fibroblast Growth Factor, Type 2Receptor, Fibroblast Growth Factor, Type 3Receptor Protein-Tyrosine KinasesTyrosine

Identifiers

PMID31959966
PMCPMC7040854
OpenAlexW3001520065

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.