ArticleScientific reports2020
Characterization of key bacterial species in the Daphnia magna microbiota using shotgun metagenomics.
Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed, 55 citations in OpenAlex.
- Phage Cocktail Designed for Wastewater Bioremediation Has Limited Effect on Crustacean Filtrator Microbiome Diversity and Health.Environmental microbiology reports · 2026Article
- From Gut to Brain: Glyphosate and Triclosan Impair Microbiome Composition, Neuroactive Metabolites, and Cognitive and Ecological Fitness inEnvironmental science & technology · 2026Article
- Article
- Investigating the core microbiome concept: Daphnia as a case study.Environmental microbiome · 2025Article
- Microbial custody: key microbiome inhabitant Sphingomonas alleviates silver nanoparticle toxicity in Daphnia magna.FEMS microbiology ecology · 2025Article
- Effects of microplastics on Daphnia-associated microbiomes in situ and in vitro.The ISME journal · 2025Article
- Host-microbiota matching and epigenetic modulation drive Daphnia magna responses to cyanobacterial stress.The ISME journal · 2025Article
- Environmental Changes Driving Shifts in the Structure and Functional Properties of the Symbiotic Microbiota ofMicroorganisms · 2024Article
- Dynamics of Gut Bacteria Across Different Zooplankton Genera in the Baltic Sea.Microbial ecology · 2024Article
- Prolonged survival time of Daphnia magna exposed to polylactic acid breakdown nanoplastics.PloS one · 2023Article
- Stochastic variation in gut bacterial community affects reproductive rates in the water flea Daphnia magna.FEMS microbiology ecology · 2022Article
- Disentangling Diet- and Medium-Associated Microbes in Shaping Daphnia Gut Microbiome.Microbial ecology · 2022Article
- Infection by a eukaryotic gut parasite in wild Daphnia sp. associates with a distinct bacterial community.FEMS microbiology ecology · 2022Article
- Microplastic exposure across trophic levels: effects on the host-microbiota of freshwater organisms.Environmental microbiome · 2022Article
- Characterization of metagenome-assembled genomes of two endo-archaea ofFrontiers in microbiomes · 2022Article
- Article
- Targeted Manipulation of Abundant and Rare Taxa in themSystems · 2021Article
- Understanding Biofilm Formation in Ecotoxicological Assays With Natural and Anthropogenic Particulates.Frontiers in microbiology · 2021Article
- Metagenomic Analysis Reveals Bacterial and Fungal Diversity and Their Bioremediation Potential From Sediments of River Ganga and Yamuna in India.Frontiers in microbiology · 2020Article
Corrections and comments
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Authors and funding
2 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The keystone zooplankton Daphnia magna has recently been used as a model system for understanding host-microbiota interactions. However, the bacterial species present and functions associated with their genomes are not well understood. In order to understand potential functions of these species, we combined 16S rRNA sequencing and shotgun metagenomics to characterize the whole-organism microbiota of Daphnia magna. We assembled five potentially novel metagenome-assembled genomes (MAGs) of core bacteria in Daphnia magna. Genes involved in host colonization and immune system evasion were detected across the MAGs. Some metabolic pathways were specific to some MAGs, including sulfur oxidation, nitrate reduction, and flagellar assembly. Amino acid exporters were identified in MAGs identified as important for host fitness, and pathways for key vitamin biosynthesis and export were identified across MAGs. In total, our examination of functions in these MAGs shows a diversity of nutrient acquisition and metabolism pathways present that may benefit the host, as well as genomic signatures of host association and immune system evasion.
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