Evidence map›Paper›PMID 31959767›Full record

ArticleScientific reports2020

Delineation of hypoxia-induced proteome shifts in osteosarcoma cells with different metastatic propensities.

Zifeng Song, Martin C Pearce, Yuan Jiang, Liping Yang, Cheri Goodall, Cristobal L Miranda, Milan Milovancev, Shay Bracha, Siva K Kolluri, Claudia S Maier

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Molecular Mechanisms of Canine Osteosarcoma Metastasis.International journal of molecular sciences · 2021
    Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Zifeng SongDepartment of Chemistry, Oregon State University, Oregon, USA.
Martin C PearceDepartment of Environmental & Molecular Toxicology, Oregon State University, Oregon, USA.
Yuan JiangDepartment of Statistics, Oregon State University, Oregon, USA.
Liping YangDepartment of Chemistry, Oregon State University, Oregon, USA.ORCID http://orcid.org/0000-0002-9011-0443
Cheri GoodallCollege of Veterinary Medicine, Oregon State University, Oregon, USA.
Cristobal L MirandaLinus Pauling Institute, Oregon State University, Oregon, USA.
Milan MilovancevCollege of Veterinary Medicine, Oregon State University, Oregon, USA.
Shay BrachaCollege of Veterinary Medicine, Oregon State University, Oregon, USA.
Siva K KolluriDepartment of Environmental & Molecular Toxicology, Oregon State University, Oregon, USA.
Claudia S MaierDepartment of Chemistry, Oregon State University, Oregon, USA. claudia.maier@oregonstate.edu.
Oregon State University · US

Funding

Orbitrap Elite with ETDS10OD020111 · OD · OREGON STATE UNIVERSITY · PI MAIER, CLAUDIA S · 2015 to 2015
$600k
NIH HHS S10 OD020111
6 · The paper itself

Abstract

Osteosarcoma (OS) is the most common bone cancer in children and young adults. Solid tumors are characterized by intratumoral hypoxia, and hypoxic cells are associated with the transformation to aggressive phenotype and metastasis. The proteome needed to support an aggressive osteosarcoma cell phenotype remains largely undefined. To link metastatic propensity to a hypoxia-induced proteotype, we compared the protein profiles of two isogenic canine OS cell lines, POS (low metastatic) and HMPOS (highly metastatic), under normoxia and hypoxia. Label-free shotgun proteomics was applied to comprehensively characterize the hypoxia-responsive proteome profiles in the OS cell phenotypes. Hypothesis-driven parallel reaction monitoring was used to validate the differential proteins observed in the shotgun data and to monitor proteins of which we expected to exhibit hypoxia responsiveness, but which were absent in the label-free shotgun data. We established a "distance" score (|z

Indexed as

AnimalsBone NeoplasmsCell Line, TumorCell MovementCell ProliferationCell Transformation, NeoplasticCollagenDogsHypoxiaNeoplasm MetastasisOsteosarcomaProteomeProteomicsCollagenProteome

Identifiers

PMID31959767
PMCPMC6971036
OpenAlexW3000625930

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.