Evidence map›Paper›PMID 31959358›Full record

ArticleKidney international2020

Whole exome sequencing identified ATP6V1C2 as a novel candidate gene for recessive distal renal tubular acidosis.

Tilman Jobst-Schwan, Verena Klämbt, Maureen Tarsio, John F Heneghan, Amar J Majmundar, Shirlee Shril, Florian Buerger, Isabel Ottlewski, Boris E Shmukler, Rezan Topaloglu and 15 more

Open access · greenAbstract read
In one paragraph

Article in Kidney international, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
  2. Article
  3. Molecular genetics and long-term outcomes of primary distal renal tubular acidosis in Asia.Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association · 2026
    Observational
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  9. Primary Distal Renal Tubular Acidosis: Toward an Optimal Correction of Metabolic Acidosis.Clinical journal of the American Society of Nephrology : CJASN · 2024
    Review
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  16. Research progress on renal calculus associate with inborn error of metabolism.Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences · 2023
    Review
  17. Article
  18. NovelJournal of personalized medicine · 2023
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors at 12 institutions in 8 countries.

Tilman Jobst-SchwanDivision of Nephrology, Department of Pediatrics, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Verena KlämbtDivision of Nephrology, Department of Pediatrics, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Maureen TarsioDepartment of Biochemistry and Molecular Biology, State University of New York (SUNY) Upstate Medical University, Syracuse, NY.
John F HeneghanDivision of Nephrology, Department of Medicine, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, USA.
Amar J MajmundarDivision of Nephrology, Department of Pediatrics, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Shirlee ShrilDivision of Nephrology, Department of Pediatrics, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Florian BuergerDivision of Nephrology, Department of Pediatrics, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Isabel OttlewskiDivision of Nephrology, Department of Pediatrics, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Boris E ShmuklerDivision of Nephrology, Department of Medicine, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, USA.
Rezan TopalogluDepartment of Pediatric Nephrology, Hacettepe University Faculty of Medicine, Ankara, Turkey.
Seema HashmiDepartment of Pediatric Nephrology, Sindh Institute of Urology and Transplantation, Karachi, Pakistan.
Farkhanda HafeezDepartment of Pediatric Nephrology, The Children's Hospital and Institute of Child Health, Lahore, Pakistan.
Francesco EmmaDepartment of Pediatric Subspecialties, Division of Nephrology, Bambino Gesù Children's Hospital-IRCCS, Rome, Italy.
Marcella GrecoDepartment of Pediatric Subspecialties, Division of Nephrology, Bambino Gesù Children's Hospital-IRCCS, Rome, Italy.
Guido F LaubeNephrology Unit, University Children's Hospital, Zürich, Switzerland.
Hanan M FathyPediatric Nephrology Unit, Alexandria Faculty of Medicine, University of Alexandria, Alexandria, Egypt.
Martin PohlDepartment of General Pediatrics, Adolescent Medicine and Neonatology, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Germany.
Jutta GellermannDepartment of Pediatrics, University Children's Hospital of Berlin, University Hospital Berlin Charité, Berlin, Germany.
Danko MilosevicUniversity of Zagreb School of Medicine, Zagreb University Hospital Center, Zagreb, Croatia.
Michelle A BaumDivision of Nephrology, Department of Pediatrics, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Shrikant ManeDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut, USA; Yale Center for Mendelian Genomics, Yale University School of Medicine, New Haven, Connecticut, USA.
Richard P LiftonDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut, USA; Yale Center for Mendelian Genomics, Yale University School of Medicine, New Haven, Connecticut, USA.
Patricia M KaneDepartment of Biochemistry and Molecular Biology, State University of New York (SUNY) Upstate Medical University, Syracuse, NY.
Seth L AlperDivision of Nephrology, Department of Medicine, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, USA.
Friedhelm HildebrandtDivision of Nephrology, Department of Pediatrics, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA. Electronic address: friedhelm.hildebrandt@childrens.harvard.edu.
Boston Children's Hospital · USBeth Israel Deaconess Medical Center · USBambino Gesù Children's Hospital · ITSUNY Upstate Medical University · USYale University · USAlexandria University · EGCharité - Universitätsmedizin Berlin · DEHacettepe University · TRSindh Institute of Urology and Transplantation · PKUniversity Children's Hospital Zurich · CHUniversity Hospital Centre Zagreb · HRUniversity of Freiburg · DE

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
STRUCTURE-FUNCTION RELATIONSHIPS IN THE ALIMENTARY TRACTP30DK034854 · NIDDK · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI JONATHAN C KAGAN · 1986 to 2026
$32.4M
Renal Physiology and Phenotyping CoreP30DK079310 · NIDDK · YALE UNIVERSITY · PI SOMLO, STEFAN · 2008 to 2022
$16.8M
Yale Center for Mendelian DisordersU54HG006504 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, GUNEL, MURAT · 2012 to 2015
$11.0M
Novel genetics, pathobiology & therapy of nephronophthisis-related ciliopathiesR01DK068306 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2004 to 2022
$6.6M
RESEARCH TRAINING IN PEDIATRIC NEPHROLOGYT32DK007726 · NIDDK · CHILDREN'S HOSPITAL BOSTON · PI BRISCOE, DAVID M. · 1994 to 2023
$5.9M
Functional characterization of the gene NPHP4R01DK064614 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2004 to 2007
$1.3M
Regulation of V-ATPases by PhosphoinositidesR01GM126020 · NIGMS · UPSTATE MEDICAL UNIVERSITY · PI KANE, PATRICIA M · 2018 to 2021
$1.1M
High Performance Computing Instrumentation for the Yale Center for Genome AnalysiS10OD018521 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2015 to 2015
$890k
NCATS NIH HHS UL1 TR001863NHGRI NIH HHS U54 HG006504NIDDK NIH HHS P30 DK034854NIDDK NIH HHS P30 DK079310NIDDK NIH HHS R01 DK064614NIDDK NIH HHS R01 DK068306NIDDK NIH HHS T32 DK007726NIGMS NIH HHS R01 GM126020NIH HHS S10 OD018521
6 · The paper itself

Abstract

Distal renal tubular acidosis is a rare renal tubular disorder characterized by hyperchloremic metabolic acidosis and impaired urinary acidification. Mutations in three genes (ATP6V0A4, ATP6V1B1 and SLC4A1) constitute a monogenic causation in 58-70% of familial cases of distal renal tubular acidosis. Recently, mutations in FOXI1 have been identified as an additional cause. Therefore, we hypothesized that further monogenic causes of distal renal tubular acidosis remain to be discovered. Panel sequencing and/or whole exome sequencing was performed in a cohort of 17 families with 19 affected individuals with pediatric onset distal renal tubular acidosis. A causative mutation was detected in one of the three "classical" known distal renal tubular acidosis genes in 10 of 17 families. The seven unsolved families were then subjected to candidate whole exome sequencing analysis. Potential disease causing mutations in three genes were detected: ATP6V1C2, which encodes another kidney specific subunit of the V-type proton ATPase (1 family); WDR72 (2 families), previously implicated in V-ATPase trafficking in cells; and SLC4A2 (1 family), a paralog of the known distal renal tubular acidosis gene SLC4A1. Two of these mutations were assessed for deleteriousness through functional studies. Yeast growth assays for ATP6V1C2 revealed loss-of-function for the patient mutation, strongly supporting ATP6V1C2 as a novel distal renal tubular acidosis gene. Thus, we provided a molecular diagnosis in a known distal renal tubular acidosis gene in 10 of 17 families (59%) with this disease, identified mutations in ATP6V1C2 as a novel human candidate gene, and provided further evidence for phenotypic expansion in WDR72 mutations from amelogenesis imperfecta to distal renal tubular acidosis.

Indexed as

Acidosis, Renal TubularVacuolar Proton-Translocating ATPasesAnion Exchange Protein 1, ErythrocyteChildChloride-Bicarbonate AntiportersDNA Mutational AnalysisExome SequencingForkhead Transcription FactorsHumansMutationAnion Exchange Protein 1, ErythrocyteATP6V1B1 protein, humanChloride-Bicarbonate AntiportersForkhead Transcription FactorsFOXI1 protein, humanSLC4A1 protein, humanSLC4A2 protein, humanVacuolar Proton-Translocating ATPasesdistal tubulepediatric nephrologyrenal acidificationrenal tubular acidosis

Identifiers

PMID31959358
PMCPMC7039771
OpenAlexW2982055381

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.