Evidence map›Paper›PMID 31958463›Full record

ArticleJournal of molecular and cellular cardiology2020

Transcriptome signature of ventricular arrhythmia in dilated cardiomyopathy reveals increased fibrosis and activated TP53.

Mary E Haywood, Andrea Cocciolo, Kadijah F Porter, Evgenia Dobrinskikh, Dobromir Slavov, Sharon L Graw, T Brett Reece, Amrut V Ambardekar, Michael R Bristow, Luisa Mestroni and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular and cellular cardiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Transcriptome studies of inherited dilated cardiomyopathies.Mammalian genome : official journal of the International Mammalian Genome Society · 2023
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. The role of p53 in liver fibrosis.Frontiers in pharmacology · 2022
    Review
  11. Article
  12. The Function of KDEL Receptors as UPR Genes in Disease.International journal of molecular sciences · 2021
    Review
  13. The Human Explanted Heart Program: A translational bridge for cardiovascular medicine.Biochimica et biophysica acta. Molecular basis of disease · 2021
    Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Mary E HaywoodHuman Medical Genetics and Genomics, University of Colorado, Aurora, CO, USA. Electronic address: mary.sweet@ucdenver.edu.
Andrea CoccioloCardiovascular Institute and Adult Medical Genetics Program, University of Colorado, Aurora, CO, USA.
Kadijah F PorterCardiovascular Institute and Adult Medical Genetics Program, University of Colorado, Aurora, CO, USA. Electronic address: kfporter@umail.iu.edu.
Evgenia DobrinskikhDivision of Renal Diseases and Hypertension, Department of Medicine University of Colorado, Aurora, CO, USA. Electronic address: evgenia.dobrinskikh@ucdenver.edu.
Dobromir SlavovCardiovascular Institute and Adult Medical Genetics Program, University of Colorado, Aurora, CO, USA. Electronic address: dobromir.slavov@ucdenver.edu.
Sharon L GrawCardiovascular Institute and Adult Medical Genetics Program, University of Colorado, Aurora, CO, USA. Electronic address: Sharon.graw@ucdenver.edu.
T Brett ReeceDepartment of Cardiothoracic Surgery, University of Colorado Hospital, Aurora, CO, USA. Electronic address: brett.reece@ucdenver.edu.
Amrut V AmbardekarDivision of Cardiology, Department of Medicine, University of Colorado, Aurora, CO, USA. Electronic address: amrut.ambardekar@ucdenver.edu.
Michael R BristowDivision of Cardiology, Department of Medicine, University of Colorado, Aurora, CO, USA. Electronic address: Michael.bristow@ucdenver.edu.
Luisa MestroniHuman Medical Genetics and Genomics, University of Colorado, Aurora, CO, USA; Cardiovascular Institute and Adult Medical Genetics Program, University of Colorado, Aurora, CO, USA. Electronic address: luisa.mestroni@ucdenver.edu.
Matthew R G TaylorHuman Medical Genetics and Genomics, University of Colorado, Aurora, CO, USA; Cardiovascular Institute and Adult Medical Genetics Program, University of Colorado, Aurora, CO, USA. Electronic address: matthew.taylor@ucdenver.edu.
University of Colorado Anschutz Medical Campus · USUniversity of Colorado Denver · USUniversity of Colorado Hospital · US

Funding

NIH Prior Approval Process ProfessionalUL1TR002535 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2018 to 2022
$51.1M
Colorado Clinical and Translational Sciences InstituteUL1TR001082 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2013 to 2017
$48.0M
Colorado Clinical and Translational Science Institute (UL1)UL1TR000154 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2012 to 2013
$20.4M
Genetics, Mechanisms and Clinical Phenotypes of Arrhythmogenic CardiomyopathyR01HL116906 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI MARCUS, FRANK I, MESTRONI, LUISA · 2013 to 2016
$9.2M
Molecular Epidemiology of Dilated CardiomyopathR01HL069071 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI MESTRONI, LUISA · 2002 to 2005
$2.3M
Whole genome DNA sequencing to identify novel genes in dilated cardiomyopathyR01HL109209 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI TAYLOR, MATTHEW R · 2012 to 2016
$2.1M
Cardiomyocyte phenotype and mechanotransduction in Filamin C gene variants causing arrhythmogenic cardiomyopathyR01HL147064 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI MESTRONI, LUISA, TAYLOR, MATTHEW R · 2020 to 2023
$2.1M
NCATS NIH HHS UL1 TR000154NCATS NIH HHS UL1 TR001082NCATS NIH HHS UL1 TR002535NHLBI NIH HHS R01 HL069071NHLBI NIH HHS R01 HL109209NHLBI NIH HHS R01 HL116906NHLBI NIH HHS R01 HL147064
6 · The paper itself

Abstract

aimsOne-third of DCM patients experience ventricular tachycardia (VT), but a clear biological basis for this has not been established. The purpose of this study was to identify transcriptome signatures and enriched pathways in the hearts of dilated cardiomyopathy (DCM) patients with VT. METHODS AND

resultsWe used RNA-sequencing in explanted heart tissue from 49 samples: 19 DCM patients with VT, 16 DCM patients without VT, and 14 non-failing controls. We compared each DCM cohort to the controls and identified the genes that were differentially expressed in DCM patients with VT but not without VT. Differentially expressed genes were evaluated using pathway analysis, and pathways of interest were investigated by qRT-PCR validation, Western blot, and microscopy. There were 590 genes differentially expressed in DCM patients with VT that are not differentially expressed in patients without VT. These genes were enriched for genes in the TGFß1 and TP53 signaling pathways. Increased fibrosis and activated TP53 signaling was demonstrated in heart tissue of DCM patients with VT.

conclusionsOur study supports that distinct biological mechanisms distinguish ventricular arrhythmia in DCM patients.

Indexed as

Arrhythmias, CardiacCardiomyopathy, DilatedCluster AnalysisCohort StudiesCollagenFemaleFibrosisGene Expression RegulationHumansMaleMiddle AgedMyocardiumPhenotypePrincipal Component AnalysisRNA, MessengerSignal TransductionCollagenRNA, MessengerTransforming Growth Factor beta1Tumor Suppressor Protein p53ArrhythmiaDilated cardiomyopathyHeart failureRNA-seqVentricular tachycardia

Identifiers

PMID31958463
PMCPMC7144813
OpenAlexW2998798376

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.