Evidence map›Paper›PMID 31957011›Full record

ArticleClinical genetics2020

Variants in NGLY1 lead to intellectual disability, myoclonus epilepsy, sensorimotor axonal polyneuropathy and mitochondrial dysfunction.

Daan M Panneman, Saskia B Wortmann, Charlotte A Haaxma, Peter M van Hasselt, Nicole I Wolf, Yvonne Hendriks, Benno Küsters, Sjenet van Emst-de Vries, Els van de Westerlo, Werner J H Koopman and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Clinical genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 37 citations in OpenAlex.

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  12. bioRxiv : the preprint server for biology · 2024
    Article
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  14. Mutations inGenes · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 3 countries.

Daan M PannemanRadboud Center for Mitochondrial Medicine, Department of Pediatrics, Amalia Children's Hospital, Nijmegen, the Netherlands.ORCID 0000-0002-4384-505X
Saskia B WortmannRadboud Center for Mitochondrial Medicine, Department of Pediatrics, Amalia Children's Hospital, Nijmegen, the Netherlands.
Charlotte A HaaxmaDepartment of Neurology, Donders Institute for Brain, Cognition and Behaviour, Nijmegen, the Netherlands.
Peter M van HasseltDepartment of Metabolic Diseases, Wilhelmina Children's Hospital Utrecht, University Medical Center Utrecht, Utrecht, the Netherlands.
Nicole I WolfDepartment of Child Neurology, Emma Children's Hospital, Amsterdam UMC - Locatie VUMC and Amsterdam Neuroscience, Vrije Universiteit, Amsterdam, the Netherlands.ORCID 0000-0003-1721-0728
Yvonne HendriksDepartment of Clinical Genetics, Amsterdam UMC - Locatie VUMC, Amsterdam, the Netherlands.
Benno KüstersDepartment of Pathology, Radboudumc, Nijmegen, the Netherlands.
Sjenet van Emst-de VriesRadboud Institute for Molecular Life Sciences, Radboudumc, Nijmegen, the Netherlands.
Els van de WesterloRadboud Institute for Molecular Life Sciences, Radboudumc, Nijmegen, the Netherlands.
Werner J H KoopmanRadboud Institute for Molecular Life Sciences, Radboudumc, Nijmegen, the Netherlands.
Liesbeth WintjesTranslational Metabolic Laboratory, Department of Laboratory Medicine, Radboudumc, Nijmegen, the Netherlands.
Frans van den BrandtTranslational Metabolic Laboratory, Department of Laboratory Medicine, Radboudumc, Nijmegen, the Netherlands.
Maaike de VriesRadboud Center for Mitochondrial Medicine, Department of Pediatrics, Amalia Children's Hospital, Nijmegen, the Netherlands.
Dirk J LefeberDepartment of Neurology, Donders Institute for Brain, Cognition and Behaviour, Nijmegen, the Netherlands.
Jan A M SmeitinkRadboud Center for Mitochondrial Medicine, Department of Pediatrics, Amalia Children's Hospital, Nijmegen, the Netherlands.
Richard J RodenburgRadboud Center for Mitochondrial Medicine, Department of Pediatrics, Amalia Children's Hospital, Nijmegen, the Netherlands.
Radboud University Nijmegen · NLAmalia Kinderziekenhuis · NLAmsterdam Neuroscience · NLEmma Kinderziekenhuis · NLParacelsus Medical University · ATUtrecht University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

NGLY1 encodes the enzyme N-glycanase that is involved in the degradation of glycoproteins as part of the endoplasmatic reticulum-associated degradation pathway. Variants in this gene have been described to cause a multisystem disease characterized by neuromotor impairment, neuropathy, intellectual disability, and dysmorphic features. Here, we describe four patients with pathogenic variants in NGLY1. As the clinical features and laboratory results of the patients suggested a multisystem mitochondrial disease, a muscle biopsy had been performed. Biochemical analysis in muscle showed a strongly reduced ATP production rate in all patients, while individual OXPHOS enzyme activities varied from normal to reduced. No causative variants in any mitochondrial disease genes were found using mtDNA analysis and whole exome sequencing. In all four patients, variants in NGLY1 were identified, including two unreported variants (c.849T>G (p.(Cys283Trp)) and c.1067A>G (p.(Glu356Gly)). Western blot analysis of N-glycanase in muscle and fibroblasts showed a complete absence of N-glycanase. One patient showed a decreased basal and maximal oxygen consumption rates in fibroblasts. Mitochondrial morphofunction fibroblast analysis showed patient specific differences when compared to control cell lines. In conclusion, variants in NGLY1 affect mitochondrial energy metabolism which in turn might contribute to the clinical disease course.

Indexed as

ChildChild, PreschoolCongenital Disorders of GlycosylationEpilepsies, MyoclonicFemaleHumansIntellectual DisabilityMaleMitochondriaMutationPeptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine AmidasePolyneuropathiesNGLY1 protein, humanPeptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine Amidasemitochondrial disordersNGLY1OXPHOS enzyme activitySeahorse respirometryWhole exome sequencing

Identifiers

PMID31957011
PMCPMC7078978
OpenAlexW3002762788

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.