Evidence map›Paper›PMID 31956989›Full record

ArticleBiotechnology and bioengineering2020

Apoptosis detection via automated algorithms to analyze biomarker translocation in reporter cells.

A H Rezwanuddin Ahmed, Zeynep Dereli-Korkut, Joanne Haeun Lee, Sidra Piracha, M Lane Gilchrist, Xuejun Jiang, Sihong Wang

Abstract read
In one paragraph

Article in Biotechnology and bioengineering, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

A H Rezwanuddin AhmedBiomedical Engineering Department, City College, City University of New York, New York City, New York.ORCID 0000-0002-6073-5741
Zeynep Dereli-KorkutBiomedical Engineering Department, City College, City University of New York, New York City, New York.ORCID 0000-0003-2698-3968
Joanne Haeun LeeBiomedical Engineering Department, City College, City University of New York, New York City, New York.
Sidra PirachaBiomedical Engineering Department, City College, City University of New York, New York City, New York.
M Lane GilchristChemical Engineering Department, City College, City University of New York, New York City, New York.ORCID 0000-0002-6247-5787
Xuejun JiangCell Biology Program, Memorial Sloan Kettering Cancer Center, New York City, New York.
Sihong WangBiomedical Engineering Department, City College, City University of New York, New York City, New York.ORCID 0000-0002-5902-343X

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Training and Career Development CoreU54CA132378 · NCI · CITY COLLEGE OF NEW YORK · PI Tim Alan Ahles, ADRIANA ESPINOSA · 2008 to 2026
$28.9M
Training and Career Development and Education CoreU54CA137788 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI ADRIANA ESPINOSA, FRANCESCA M GANY · 2008 to 2026
$28.1M
Ferroptosis, Cellular Metabolism, and CancerR01CA204232 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI JIANG, XUEJUN · 2017 to 2025
$4.1M
Mechanisms and Function of Autophagy in CancerR01CA166413 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI JIANG, XUEJUN · 2013 to 2023
$3.9M
Division of Chemical, Bioengineering, Environmental, and Transport Systems CBET 1055608NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA166413NCI NIH HHS R01 CA204232NCI NIH HHS U54 CA132378NCI NIH HHS U54 CA137788Pershing Square Sohn ​Cancer Research Alliance
6 · The paper itself

Abstract

Rapid, efficient, and robust quantitative analyses of dynamic apoptotic events are essential in a high-throughput screening workflow. Currently used methods have several bottlenecks, specifically, limitations in available fluorophores for downstream assays and misinterpretation of statistical image data analysis. In this study, we developed cytochrome-C (Cyt-C) and caspase-3/-8 reporter cell lines using lung (PC9) and breast (T47D) cancer cells, and characterized them from the response to apoptotic stimuli. In these two reporter cell lines, the spatial fluorescent signal translocation patterns served as reporters of activations of apoptotic events, such as Cyt-C release and caspase-3/-8 activation. We also developed a vision-based, tunable, automated algorithm in MATLAB to implement the robust and accurate analysis of signal translocation in single or multiple cells. Construction of the reporter cell lines allows live monitoring of apoptotic events without the need for any other dyes or fixatives. Our algorithmic implementation forgoes the use of simple image statistics for more robust analytics. Our optimized algorithm can achieve a precision greater than 90% and a sensitivity higher than 85%. Combining our automated algorithm with reporter cells bearing a single-color dye/fluorophore, we expect our approach to become an integral component in the high-throughput drug screening workflow.

Indexed as

AlgorithmsApoptosisBiomarkersCaspase 3Caspase 8Cell Line, TumorCytochromes cCytological TechniquesHumansImage Processing, Computer-AssistedMicroscopy, FluorescenceBiomarkersCaspase 3Caspase 8Cytochromes cbiomarker translocationcaspase-3caspase-8cytochrome-Cdetection algorithmreporter cells

Identifiers

PMID31956989
PMCPMC7703573

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.