Evidence map›Paper›PMID 31956908›Full record

ArticleNucleic acids research2020

Secondary nucleotide messenger c-di-GMP exerts a global control on natural product biosynthesis in streptomycetes.

Roman Makitrynskyy, Olga Tsypik, Desirèe Nuzzo, Thomas Paululat, David L Zechel, Andreas Bechthold

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. A new paradigm for the regulation of A40926B0 biosynthesis.Synthetic and systems biotechnology · 2025
    Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. CdgB Regulates Morphological Differentiation and Toyocamycin Production inInternational journal of molecular sciences · 2024
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Cyclic Nucleotide Phosphodiesterases in Alcohol Use Disorders: Involving Gut Microbiota.The international journal of neuropsychopharmacology · 2023
    Article
  16. Article
  17. Review
  18. Article
  19. Properties of SpontaneousCytology and genetics · 2022
    Article
  20. Genetic Engineering ofMicroorganisms · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Roman MakitrynskyyPharmaceutical Biology and Biotechnology, Institute of Pharmaceutical Sciences, Albert-Ludwigs University, Freiburg 79104, Germany.
Olga TsypikPharmaceutical Biology and Biotechnology, Institute of Pharmaceutical Sciences, Albert-Ludwigs University, Freiburg 79104, Germany.
Desirèe NuzzoPharmaceutical Biology and Biotechnology, Institute of Pharmaceutical Sciences, Albert-Ludwigs University, Freiburg 79104, Germany.
Thomas PaululatOrganic Chemistry, University of Siegen, Siegen 57068, Germany.
David L ZechelDepartment of Chemistry, Queen's University, Kingston, Ontario K7L 3N6, Canada.
Andreas BechtholdPharmaceutical Biology and Biotechnology, Institute of Pharmaceutical Sciences, Albert-Ludwigs University, Freiburg 79104, Germany.
University of Freiburg · DEQueen's University · CAUniversity of Siegen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cyclic dimeric 3'-5' guanosine monophosphate, c-di-GMP, is a ubiquitous second messenger controlling diverse cellular processes in bacteria. In streptomycetes, c-di-GMP plays a crucial role in a complex morphological differentiation by modulating an activity of the pleiotropic regulator BldD. Here we report that c-di-GMP plays a key role in regulating secondary metabolite production in streptomycetes by altering the expression levels of bldD. Deletion of cdgB encoding a diguanylate cyclase in Streptomycesghanaensis reduced c-di-GMP levels and the production of the peptidoglycan glycosyltransferase inhibitor moenomycin A. In contrast to the cdgB mutant, inactivation of rmdB, encoding a phosphodiesterase for the c-di-GMP hydrolysis, positively correlated with the c-di-GMP and moenomycin A accumulation. Deletion of bldD adversely affected the synthesis of secondary metabolites in S. ghanaensis, including the production of moenomycin A. The bldD-deficient phenotype is partly mediated by an increase in expression of the pleiotropic regulatory gene wblA. Genetic and biochemical analyses demonstrate that a complex of c-di-GMP and BldD effectively represses transcription of wblA, thus preventing sporogenesis and sustaining antibiotic synthesis. These results show that manipulation of the expression of genes controlling c-di-GMP pool has the potential to improve antibiotic production as well as activate the expression of silent gene clusters.

Indexed as

Bacterial ProteinsBambermycinsBiological ProductsCyclic GMPDNA-Binding ProteinsEscherichia coli ProteinsGene DeletionGene Expression Regulation, BacterialNucleotidesPeptidoglycan GlycosyltransferasePhosphorus-Oxygen LyasesSecond Messenger SystemsStreptomycetaceaeTranscription FactorsBacterial ProteinsBambermycinsBiological Productsbis(3',5')-cyclic diguanylic acidBldD protein, Streptomyces coelicolorCyclic GMPdiguanylate cyclaseDNA-Binding ProteinsEscherichia coli Proteinsmoenomycin ANucleotidesPeptidoglycan GlycosyltransferasePhosphorus-Oxygen LyasesTranscription Factors

Identifiers

PMID31956908
PMCPMC7026642
OpenAlexW3003078574

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.