Evidence map›Paper›PMID 31955848›Full record

ArticleCell2020

Cryo-EM Reveals Integrin-Mediated TGF-β Activation without Release from Latent TGF-β.

Melody G Campbell, Anthony Cormier, Saburo Ito, Robert I Seed, Andrew J Bondesson, Jianlong Lou, James D Marks, Jody L Baron, Yifan Cheng, Stephen L Nishimura

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 130 papers.

0numbers the graph read from it
0cells of the map it votes in
130citing papers in PubMed
13.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

130 citing papers in PubMed, 175 citations in OpenAlex.

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70 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Melody G CampbellDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA.
Anthony CormierDepartment of Pathology, University of California, San Francisco, San Francisco, CA, USA.
Saburo ItoDepartment of Pathology, University of California, San Francisco, San Francisco, CA, USA.
Robert I SeedDepartment of Pathology, University of California, San Francisco, San Francisco, CA, USA.
Andrew J BondessonDepartment of Pathology, University of California, San Francisco, San Francisco, CA, USA.
Jianlong LouDepartment of Anesthesia and Perioperative Care, University of California, San Francisco, San Francisco, CA, USA.
James D MarksDepartment of Anesthesia and Perioperative Care, University of California, San Francisco, San Francisco, CA, USA.
Jody L BaronDepartment of Medicine, University of California, San Francisco, San Francisco, CA, USA.
Yifan ChengDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA; Howard Hughes Medical Institute, University of California, San Francisco, San Francisco, CA, USA. Electronic address: yifan.cheng@ucsf.edu.
Stephen L NishimuraDepartment of Pathology, University of California, San Francisco, San Francisco, CA, USA. Electronic address: stephen.nishimura@ucsf.edu.
University of California, San Francisco · USHoward Hughes Medical Institute · US

Funding

UCSF Liver Core CenterP30DK026743 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Holger Willenbring · 1986 to 2026
$30.7M
UC BRAID Center for Accelerated Innovation COVID-19 diagnostic project developmentU54HL119893 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI PALAZZOLO, MICHAEL J · 2013 to 2020
$18.3M
Structural mechanism of integrin-mediated TGF-b activationR01HL134183 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Yifan Cheng, Stephen L Nishimura · 2016 to 2026
$5.9M
Renewable antibodies to secreted proteins and single and multi-pass cell surfaceP41CA196276 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CRAIK, CHARLES SCOTT · 2014 to 2018
$5.8M
Structures and gating mechanisms of TRP ion channelsR01GM098672 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHENG, YIFAN · 2011 to 2018
$2.6M
Role of genetic variation in TGF-beta overactivation in COPDR01HL113032 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI NISHIMURA, STEPHEN L · 2012 to 2015
$2.1M
Acquisition of an electron microscope for high-resolution single particle cryo-EMS10OD021741 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHENG, YIFAN · 2016 to 2016
$2.0M
Identifying and modulating therapeutic targets in a model of hepatitis BR01DK093646 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BARON, JODY L · 2012 to 2016
$1.7M
Linux cluster for near atomic resolution single particle cryo-EMS10OD020054 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHENG, YIFAN · 2015 to 2015
$456k
Howard Hughes Medical InstituteNCI NIH HHS P41 CA196276NHLBI NIH HHS R01 HL113032NHLBI NIH HHS R01 HL134183NHLBI NIH HHS U54 HL119893NIDDK NIH HHS P30 DK026743NIDDK NIH HHS R01 DK093646NIGMS NIH HHS R01 GM098672NIH HHS S10 OD020054NIH HHS S10 OD021741
6 · The paper itself

Abstract

Integrin αvβ8 binds with exquisite specificity to latent transforming growth factor-β (L-TGF-β). This binding is essential for activating L-TGF-β presented by a variety of cell types. Inhibiting αvβ8-mediated TGF-β activation blocks immunosuppressive regulatory T cell differentiation, which is a potential therapeutic strategy in cancer. Using cryo-electron microscopy, structure-guided mutagenesis, and cell-based assays, we reveal the binding interactions between the entire αvβ8 ectodomain and its intact natural ligand, L-TGF-β, as well as two different inhibitory antibody fragments to understand the structural underpinnings of αvβ8 binding specificity and TGF-β activation. Our studies reveal a mechanism of TGF-β activation where mature TGF-β signals within the confines of L-TGF-β and the release and diffusion of TGF-β are not required. The structural details of this mechanism provide a rational basis for therapeutic strategies to inhibit αvβ8-mediated L-TGF-β activation.

Indexed as

AnimalsAntibodiesBinding SitesBronchiCHO CellsCricetulusCryoelectron MicroscopyFemaleHumansImmunoglobulin Fab FragmentsIntegrinsLatent TGF-beta Binding ProteinsLymphocyte ActivationMaleMinkProtein BindingAntibodiesImmunoglobulin Fab Fragmentsintegrin alphavbeta8IntegrinsLatent TGF-beta Binding ProteinsTGFB1 protein, humanTransforming Growth Factor beta1cryo-electron microscopyGARPintegrinintegrin conformationstructural biologyTGF-betaTGF-beta activationTGF-b signaling

Identifiers

PMID31955848
PMCPMC7238552
OpenAlexW2999597532

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.