Evidence map›Paper›PMID 31955686›Full record

ArticlePhilosophical transactions. Series A, Mathematical, physical, and engineering sciences2020

A survey of algorithms for transforming molecular dynamics data into metadata for

Michela Taufer, Trilce Estrada, Travis Johnston

Open access · bronzeAbstract read
In one paragraph

Article in Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Structure-basedComputational and structural biotechnology journal · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Michela TauferElectrical Engineering and Computer Science Department, The University of Tennessee Knoxville, 401 Min H. Kao Bldg., 1520 Middle Drive, Knoxville, TN 37996-2250, USA.
Trilce EstradaComputer Science Department, University of New Mexico, MSC01 1130, Albuquerque, NM 87131-1070, USA.
Travis JohnstonOak Ridge National Laboratory, PO Box 2008, Oak Ridge, TN 37831, USA.
Oak Ridge National Laboratory · USUniversity of New Mexico · USUniversity of Tennessee at Knoxville · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This paper presents the survey of three algorithms to transform atomic-level molecular snapshots from molecular dynamics (MD) simulations into metadata representations that are suitable for

Indexed as

machine learningMapReduceprotein engineeringprotein foldingprotein–ligand docking

Identifiers

PMID31955686
PMCPMC7015296
OpenAlexW2999658327

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.