Evidence map›Paper›PMID 31954346›Full record

ArticleClinical imaging2020

Retraining an open-source pneumothorax detecting machine learning algorithm for improved performance to medical images.

Gene Kitamura, Christopher Deible

Abstract read
In one paragraph

Article in Clinical imaging, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Deep learning for pneumothorax diagnosis: a systematic review and meta-analysis.European respiratory review : an official journal of the European Respiratory Society · 2023
    Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Gene KitamuraUniversity of Pittsburgh Medical Center (UPMC) and University of Pittsburgh, UPMC Department of Radiology, 200 Lothrop St., Pittsburgh, PA 15213, USA. Electronic address: kitamurag@upmc.edu.
Christopher DeibleUniversity of Pittsburgh Medical Center (UPMC) and University of Pittsburgh, UPMC Department of Radiology, 200 Lothrop St., Pittsburgh, PA 15213, USA. Electronic address: deiblec@upmc.edu.

Funding

University of Pittsburgh Clinical and Translational Science InstituteUL1TR001857 · NCATS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI REIS, STEVEN E · 2016 to 2025
$129.3M
NCATS NIH HHS UL1 TR001857
6 · The paper itself

Abstract

purposeTo validate a machine learning model trained on an open source dataset and subsequently optimize it to chest X-rays with large pneumothoraces from our institution.

methodsThe study was retrospective in nature. The open-source chest X-ray (CXR8) dataset was dichotomized to cases with pneumothorax (PTX) and all other cases (non-PTX), resulting in 41,946 non-PTX and 4696 PTX cases for the training set and 11,120 non-PTX and 541 PTX cases for the validation set. A limited supervision machine learning model was constructed to incorporate both localized and unlocalized pathology. Cases were then queried from our health system from 2013 to 2017. A total of 159 pneumothorax and 682 non-pneumothorax cases were available for the training set. For the validation set, 48 pneumothorax and 1287 non-pneumothorax cases were available. The model was trained, a receiver operator curve (ROC) was created, and output metrics, including area under the curve (AUC), sensitivity and specificity were calculated.

resultsInitial training of the model using the CXR8 dataset resulted in an AUC of 0.90 for pneumothorax detection. Naively inferring our own validation dataset on the CXR8 trained model output an AUC of 0.59. After re-training the model with our own training dataset, the validation dataset inference output an AUC of 0.90.

conclusionOur study showed that even though you may get great results on open-source datasets, those models may not translate well to real world data without an intervening retraining process.

Indexed as

AlgorithmsMachine LearningArea Under CurveDeep LearningHumansMalePneumothoraxRadiographyRetrospective StudiesSensitivity and SpecificityArtificial intelligenceChest X-rayMachine learningNeural networkPneumothorax

Identifiers

PMID31954346
PMCPMC7085967

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.