Evidence map›Paper›PMID 31953386›Full record

ArticleNature communications2020

Rad50 zinc hook functions as a constitutive dimerization module interchangeable with SMC hinge.

Hisashi Tatebe, Chew Theng Lim, Hiroki Konno, Kazuhiro Shiozaki, Akira Shinohara, Takayuki Uchihashi, Asako Furukohri

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Dynamic Properties of the DNA Damage Response Mre11/Rad50 Complex.International journal of molecular sciences · 2023
    Review
  8. Review
  9. Review
  10. Article
  11. Review
  12. Review
  13. The dynamic nature of the Mre11-Rad50 DNA break repair complex.Progress in biophysics and molecular biology · 2021
    Review
  14. A conserved Ctp1/CtIP C-terminal peptide stimulates Mre11 endonuclease activity.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  15. MRN complex is an essential effector of DNA damage repair.Journal of Zhejiang University. Science. B · 2021
    Review
  16. Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Hisashi TatebeNara Institute of Science and Technology, Graduate School of Biological Sciences, Ikoma, Nara, 630-0192, Japan.ORCID http://orcid.org/0000-0002-1994-316X
Chew Theng LimNara Institute of Science and Technology, Graduate School of Biological Sciences, Ikoma, Nara, 630-0192, Japan.ORCID http://orcid.org/0000-0003-0074-5355
Hiroki KonnoWPI Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa, 920-1192, Japan.
Kazuhiro ShiozakiNara Institute of Science and Technology, Graduate School of Biological Sciences, Ikoma, Nara, 630-0192, Japan.ORCID http://orcid.org/0000-0002-0395-5457
Akira ShinoharaInstitute for Protein Research, Osaka University, Suita, Osaka, 565-0871, Japan.ORCID http://orcid.org/0000-0003-4207-8247
Takayuki UchihashiDepartment of Physics, Nagoya University, Nagoya, 464-8602, Japan. uchihast@d.phys.nagoya-u.ac.jp.ORCID http://orcid.org/0000-0002-0263-5312
Asako FurukohriInstitute for Protein Research, Osaka University, Suita, Osaka, 565-0871, Japan. a.furukohri@protein.osaka-u.ac.jp.ORCID http://orcid.org/0000-0002-4329-6978
Nara Institute of Science and Technology · JPProtein Research Foundation · JPKanazawa University · JPNational Institutes of Natural Sciences · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The human Mre11/Rad50 complex is one of the key factors in genome maintenance pathways. Previous nanoscale imaging by atomic force microscopy (AFM) showed that the ring-like structure of the human Mre11/Rad50 complex transiently opens at the zinc hook of Rad50. However, imaging of the human Mre11/Rad50 complex by high-speed AFM shows that the Rad50 coiled-coil arms are consistently bridged by the dimerized hooks while the Mre11/Rad50 ring opens by disconnecting the head domains; resembling other SMC proteins such as cohesin or condensin. These architectural features are conserved in the yeast and bacterial Mre11/Rad50 complexes. Yeast strains harboring the chimeric Mre11/Rad50 complex containing the SMC hinge of bacterial condensin MukB instead of the RAD50 hook properly functions in DNA repair. We propose that the basic role of the Rad50 hook is similar to that of the SMC hinge, which serves as rather stable dimerization interface.

Indexed as

DimerizationAcid Anhydride HydrolasesAdenosine TriphosphatasesAnimalsCell Cycle ProteinsChromosomal Proteins, Non-HistoneCohesinsDNA-Binding ProteinsDNA Breaks, Double-StrandedDNA RepairEscherichia coliHomologous RecombinationHumansMicroscopy, Atomic ForceMRE11 Homologue ProteinMultiprotein ComplexesAcid Anhydride HydrolasesAdenosine TriphosphatasesCell Cycle ProteinsChromosomal Proteins, Non-HistoneCohesinscondensin complexesDNA-Binding ProteinsMRE11 Homologue ProteinMRE11 protein, humanMultiprotein ComplexesNBN protein, humanNuclear ProteinsRAD50 protein, humanSaccharomyces cerevisiae ProteinsZinc

Identifiers

PMID31953386
PMCPMC6969161
OpenAlexW2999731159

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.