Evidence map›Paper›PMID 31951383›Full record

ArticleAnalytical chemistry2020

ExteNDing Proteome Coverage with Legumain as a Highly Specific Digestion Protease.

Wai Tuck Soh, Fatih Demir, Elfriede Dall, Andreas Perrar, Sven O Dahms, Maithreyan Kuppusamy, Hans Brandstetter, Pitter F Huesgen

Abstract read
In one paragraph

Article in Analytical chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. ProtView: A Versatile Tool forJournal of proteome research · 2023
    Article
  8. Article
  9. Sensitive Plant N-Terminome Profiling with HUNTER.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Wai Tuck SohDepartment of Biosciences , University of Salzburg , 5020 Salzburg , Austria.ORCID 0000-0003-0082-7983
Fatih DemirCentral Institute for Engineering, Electronics and Analytics, ZEA-3 , Forschungszentrum Jülich , 52428 Jülich , Germany.ORCID 0000-0002-5744-0205
Elfriede DallDepartment of Biosciences , University of Salzburg , 5020 Salzburg , Austria.
Andreas PerrarCentral Institute for Engineering, Electronics and Analytics, ZEA-3 , Forschungszentrum Jülich , 52428 Jülich , Germany.
Sven O DahmsDepartment of Biosciences , University of Salzburg , 5020 Salzburg , Austria.
Maithreyan KuppusamyCentral Institute for Engineering, Electronics and Analytics, ZEA-3 , Forschungszentrum Jülich , 52428 Jülich , Germany.ORCID 0000-0001-6866-0417
Hans BrandstetterDepartment of Biosciences , University of Salzburg , 5020 Salzburg , Austria.ORCID 0000-0002-6089-3045
Pitter F HuesgenCentral Institute for Engineering, Electronics and Analytics, ZEA-3 , Forschungszentrum Jülich , 52428 Jülich , Germany.ORCID 0000-0002-0335-2242
Forschungszentrum Jülich · DEUniversity of Salzburg · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bottom-up mass spectrometry-based proteomics utilizes proteolytic enzymes with well characterized specificities to generate peptides amenable for identification by high-throughput tandem mass spectrometry. Trypsin, which cuts specifically after the basic residues lysine and arginine, is the predominant enzyme used for proteome digestion, although proteases with alternative specificities are required to detect sequences that are not accessible after tryptic digest. Here, we show that the human cysteine protease legumain exhibits a strict substrate specificity for cleavage after asparagine and aspartic acid residues during in-solution digestions of proteomes extracted from

Indexed as

AnimalsArabidopsisAsparaginyl EndopeptidaseCysteine EndopeptidasesEscherichia coliHumansMicePlant LeavesProteomeProteomicsAsparaginyl EndopeptidaseCysteine EndopeptidasesProteome

Identifiers

PMID31951383
PMCPMC7075662
OpenAlexW2999994400

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.