Evidence map›Paper›PMID 31950558›Full record

ArticleMolecular microbiology2020

A bifunctional salvage pathway for two distinct S-adenosylmethionine by-products that is widespread in bacteria, including pathogenic Escherichia coli.

Justin A North, John A Wildenthal, Tobias J Erb, Bradley S Evans, Kathryn M Byerly, John A Gerlt, Fred R Tabita

Open access · greenAbstract read
In one paragraph

Article in Molecular microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Article
  3. Journal of bacteriology · 2025
    Article
  4. Antibacterial Activities of Phenolic Compounds inAntibiotics (Basel, Switzerland) · 2024
    Article
  5. Microbiology spectrum · 2024
    Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Discovery of novel pathways for carbohydrate metabolism.Current opinion in chemical biology · 2021
    Review
  12. Role ofInfection and immunity · 2020
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Justin A NorthDepartment of Microbiology, The Ohio State University, Columbus, OH, USA.
John A WildenthalDepartment of Microbiology, The Ohio State University, Columbus, OH, USA.
Tobias J ErbDepartment of Biochemistry and Synthetic Metabolism, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.
Bradley S EvansThe Donald Danforth Plant Science Center, St. Louis, MO, USA.
Kathryn M ByerlyDepartment of Microbiology, The Ohio State University, Columbus, OH, USA.
John A GerltDepartment of Biochemistry, The Institute for Genomic Biology, Champaign, IL, USA.
Fred R TabitaDepartment of Microbiology, The Ohio State University, Columbus, OH, USA.ORCID 0000-0001-7338-447X
The Ohio State University · USDonald Danforth Plant Science Center · USMax Planck Institute for Terrestrial Microbiology · DEUniversity of Illinois Urbana-Champaign · US

Funding

Core H: MicrobiologyU54GM093342 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI CRONAN, JOHN E. · 2010 to 2015
$34.6M
Salvage of the sulfur and carbon byproducts of S-adenosylmethionine metabolism in pathogenic bacteriaR01AI154456 · NIAID · OHIO STATE UNIVERSITY · PI NORTH, JUSTIN ANDREW · 2020 to 2025
$1.9M
Characterization of novel sulfur salvage mechanisms in Rodospirillum rubrumF32GM109547 · NIGMS · OHIO STATE UNIVERSITY · PI NORTH, JUSTIN ANDREW · 2014 to 2015
$112k
NIAID NIH HHS R01 AI154456NIGMS NIH HHS F32 GM109547NIGMS NIH HHS U54 GM093342
6 · The paper itself

Abstract

S-adenosyl-l-methionine (SAM) is a necessary cosubstrate for numerous essential enzymatic reactions including protein and nucleotide methylations, secondary metabolite synthesis and radical-mediated processes. Radical SAM enzymes produce 5'-deoxyadenosine, and SAM-dependent enzymes for polyamine, neurotransmitter and quorum sensing compound synthesis produce 5'-methylthioadenosine as by-products. Both are inhibitory and must be addressed by all cells. This work establishes a bifunctional oxygen-independent salvage pathway for 5'-deoxyadenosine and 5'-methylthioadenosine in both Rhodospirillum rubrum and Extraintestinal Pathogenic Escherichia coli. Homologous genes for this pathway are widespread in bacteria, notably pathogenic strains within several families. A phosphorylase (Rhodospirillum rubrum) or separate nucleoside and kinase (Escherichia coli) followed by an isomerase and aldolase sequentially function to salvage these two wasteful and inhibitory compounds into adenine, dihydroxyacetone phosphate and acetaldehyde or (2-methylthio)acetaldehyde during both aerobic and anaerobic growth. Both SAM by-products are metabolized with equal affinity during aerobic and anaerobic growth conditions, suggesting that the dual-purpose salvage pathway plays a central role in numerous environments, notably the human body during infection. Our newly discovered bifunctional oxygen-independent pathway, widespread in bacteria, salvages at least two by-products of SAM-dependent enzymes for carbon and sulfur salvage, contributing to cell growth.

Indexed as

Bacterial ProteinsCarbonDeoxyadenosinesDihydroxyacetone PhosphateEscherichia coliFructose-Bisphosphate AldolaseIsomerasesMetabolic Networks and PathwaysMethionineN-Glycosyl HydrolasesOxygenPhosphorylasesPhosphotransferasesRhodospirillum rubrumS-AdenosylmethionineThionucleosides5'-deoxyadenosine5'-methylthioadenosineBacterial ProteinsCarbonDeoxyadenosinesDihydroxyacetone PhosphateFructose-Bisphosphate AldolaseIsomerasesMethionineN-Glycosyl HydrolasesOxygenPhosphorylasesPhosphotransferasesS-AdenosylmethionineThionucleosidesbacteriadihydroxyacetone phosphateextraintestinal pathogenic Escherichia colimethionineRhodospirillum rubrumS-adenosylmethionine

Identifiers

PMID31950558
PMCPMC7237333
OpenAlexW2999241145

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.