Evidence map›Paper›PMID 31949143›Full record

ArticleNature communications2020

Genomic programming of IRF4-expressing human Langerhans cells.

Sofia Sirvent, Andres F Vallejo, James Davies, Kalum Clayton, Zhiguo Wu, Jeongmin Woo, Jeremy Riddell, Virendra K Chaudhri, Patrick Stumpf, Liliya Angelova Nazlamova and 12 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Switching between tolerance and immunity: Do counter-acting gene networks dictate Langerhans cell function in the skin?BioEssays : news and reviews in molecular, cellular and developmental biology · 2021
    Article
  9. Article
  10. Article
  11. Development of an Inflammatory CD14Frontiers in immunology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 4 institutions in 3 countries.

Sofia SirventClinical and Experimental Sciences, Sir Henry Wellcome Laboratories, Faculty of Medicine, University of Southampton, SO16 6YD, Southampton, UK.
Andres F VallejoClinical and Experimental Sciences, Sir Henry Wellcome Laboratories, Faculty of Medicine, University of Southampton, SO16 6YD, Southampton, UK.ORCID http://orcid.org/0000-0002-4688-0598
James DaviesClinical and Experimental Sciences, Sir Henry Wellcome Laboratories, Faculty of Medicine, University of Southampton, SO16 6YD, Southampton, UK.
Kalum ClaytonClinical and Experimental Sciences, Sir Henry Wellcome Laboratories, Faculty of Medicine, University of Southampton, SO16 6YD, Southampton, UK.ORCID http://orcid.org/0000-0002-1143-3931
Zhiguo WuDivision of Immunobiology & Center for Systems Immunology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA.
Jeongmin WooSamsung Genome Institute, Samsung Medical Center, Seoul, South Korea.
Jeremy RiddellCenter for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA.
Virendra K ChaudhriDivision of Immunobiology & Center for Systems Immunology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA.ORCID http://orcid.org/0000-0003-3528-4667
Patrick StumpfHuman Development and Health, Faculty of Medicine, University of Southampton, SO17 1BJ, Southampton, UK.ORCID http://orcid.org/0000-0003-0862-0290
Liliya Angelova NazlamovaClinical and Experimental Sciences, Sir Henry Wellcome Laboratories, Faculty of Medicine, University of Southampton, SO16 6YD, Southampton, UK.
Gabrielle WhewayHuman Development and Health, Faculty of Medicine, University of Southampton, SO17 1BJ, Southampton, UK.ORCID http://orcid.org/0000-0002-0494-0783
Matthew Rose-ZerilliCancer Sciences, Faculty of Medicine, University of Southampton, SO16 6YD, Southampton, UK.
Jonathan WestCancer Sciences, Faculty of Medicine, University of Southampton, SO16 6YD, Southampton, UK.ORCID http://orcid.org/0000-0002-5709-6790
Mario PujatoDivision of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA.
Xiaoting ChenCenter for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA.ORCID http://orcid.org/0000-0002-3782-3962
Christopher H WoelkMerck's Exploratory Science Center, Cambridge, MA, 02141, USA.ORCID http://orcid.org/0000-0002-1977-0502
Ben MacArthurCancer Sciences, Faculty of Medicine, University of Southampton, SO16 6YD, Southampton, UK.ORCID http://orcid.org/0000-0002-5396-9750
Michael Ardern-JonesClinical and Experimental Sciences, Sir Henry Wellcome Laboratories, Faculty of Medicine, University of Southampton, SO16 6YD, Southampton, UK.ORCID http://orcid.org/0000-0003-1466-2016
Peter S FriedmannClinical and Experimental Sciences, Sir Henry Wellcome Laboratories, Faculty of Medicine, University of Southampton, SO16 6YD, Southampton, UK.
Matthew T WeirauchCenter for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA.ORCID http://orcid.org/0000-0001-7977-9122
Harinder SinghDivision of Immunobiology & Center for Systems Immunology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA. harinder@pitt.edu.ORCID http://orcid.org/0000-0002-6330-8526
Marta E PolakClinical and Experimental Sciences, Sir Henry Wellcome Laboratories, Faculty of Medicine, University of Southampton, SO16 6YD, Southampton, UK. m.e.polak@soton.ac.uk.ORCID http://orcid.org/0000-0003-2878-476X
University of Southampton · GBCincinnati Children's Hospital Medical Center · USMerck & Co., Inc., Rahway, NJ, USA (United States) · USSamsung Medical Center · KR

Funding

Tissue Repository CoreP30AR070549 · NIAMS · CINCINNATI CHILDRENS HOSP MED CTR · PI Leah Claire Kottyan · 2016 to 2026
$7.7M
Medical Research Council MC_PC_15078NIAMS NIH HHS P30 AR070549Wellcome Trust
6 · The paper itself

Abstract

Langerhans cells (LC) can prime tolerogenic as well as immunogenic responses in skin, but the genomic states and transcription factors (TF) regulating these context-specific responses are unclear. Bulk and single-cell transcriptional profiling demonstrates that human migratory LCs are robustly programmed for MHC-I and MHC-II antigen presentation. Chromatin analysis reveals enrichment of ETS-IRF and AP1-IRF composite regulatory elements in antigen-presentation genes, coinciding with expression of the TFs, PU.1, IRF4 and BATF3 but not IRF8. Migration of LCs from the epidermis is accompanied by upregulation of IRF4, antigen processing components and co-stimulatory molecules. TNF stimulation augments LC cross-presentation while attenuating IRF4 expression. CRISPR-mediated editing reveals IRF4 to positively regulate the LC activation programme, but repress NF2EL2 and NF-kB pathway genes that promote responsiveness to oxidative stress and inflammatory cytokines. Thus, IRF4-dependent genomic programming of human migratory LCs appears to enable LC maturation while attenuating excessive inflammatory and immunogenic responses in the epidermis.

Indexed as

GenomicsAntigen PresentationBasic-Leucine Zipper Transcription FactorsCell MovementCRISPR-Cas SystemsCytokinesGene EditingGene Expression ProfilingHistocompatibility Antigens Class IHistocompatibility Antigens Class IIHumansInterferon Regulatory Factor-4Interferon Regulatory Factor-8Interferon Regulatory FactorsLangerhans CellsNF-kappa BBasic-Leucine Zipper Transcription FactorsBATF3 protein, humanCytokinesHistocompatibility Antigens Class IHistocompatibility Antigens Class IIInterferon Regulatory Factor-4Interferon Regulatory Factor-8Interferon Regulatory FactorsNF-kappa BProto-Oncogene ProteinsProto-Oncogene Protein Spi-1Repressor ProteinsTrans-Activators

Identifiers

PMID31949143
PMCPMC6965086
OpenAlexW2999630643

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.