Evidence map›Paper›PMID 31947936›Full record

ArticleGenes2020

Inference of Breed Structure in Farm Animals: Empirical Comparison between SNP and Microsatellite Performance.

Abbas Laoun, Sahraoui Harkat, Mohamed Lafri, Semir Bechir Suheil Gaouar, Ibrahim Belabdi, Elena Ciani, Maarten De Groot, Véronique Blanquet, Gregoire Leroy, Xavier Rognon and 1 more

Open access · goldAbstract read
In one paragraph

Article in Genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 31 citations in OpenAlex.

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  16. Genetic Differentiation among Livestock Breeds-Values for FAnimals : an open access journal from MDPI · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

Abbas LaounUniversité de Djelfa, Djelfa 17000, Algeria.
Sahraoui HarkatScience Veterinary Institute, University of Blida, BP 270, Blida 09000, Algeria.
Mohamed LafriScience Veterinary Institute, University of Blida, BP 270, Blida 09000, Algeria.
Semir Bechir Suheil GaouarLaboratory of Physiopathologie et biochimie de la Nutrition (PpBioNut) Department of Biology, Abou Bekr Belkaid Tlemcen University, Tlemcen 13000, Algeria.ORCID 0000-0001-8691-7116
Ibrahim BelabdiScience Veterinary Institute, University of Blida, BP 270, Blida 09000, Algeria.
Elena CianiDepartment of Biosciences, Biotechnologies and Biopharmaceutics, University of Bari, 74100 Bari, Italy.
Maarten De GrootDr. Van Haeringen Laboratorium BV, Agro Business Park 100, 6708PW Wageningen, The Netherlands.
Véronique BlanquetUniv. Limoges, INRAE, EA7500, USC1061 GAMAA, F-87000 Limoges, France.
Gregoire LeroyUniversité Paris-Saclay, INRA, AgroParisTech, GABI 78350 Jouy-en-Josas, France.
Xavier RognonUniversité Paris-Saclay, INRA, AgroParisTech, GABI 78350 Jouy-en-Josas, France.ORCID 0000-0003-3087-6794
Anne Da SilvaUniv. Limoges, INRAE, EA7500, USC1061 GAMAA, F-87000 Limoges, France.
University of Blida · DZAgroParisTech · FRInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FRUniversity of Abou Bekr Belkaïd · DZUniversity of Bari Aldo Moro · ITZiane Achour University of Djelfa · DZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Knowledge of population structure is essential to improve the management and conservation of farm animal genetic resources. Microsatellites, which have long been popular for this type of analysis, are more and more neglected in favor of whole-genome single nucleotide polymorphism (SNP) chips that are now available for the main farmed animal species. In this study, we compared genetic patterns derived from microsatellites to that inferred by SNPs, considering three pairs of datasets of sheep and cattle. Population genetic differentiation analyses (Fixation index, F

Indexed as

Animal HusbandryAnimalsAnimals, DomesticCattleGenetic VariationGenomeGenotypeLinkage DisequilibriumMicrosatellite RepeatsOligonucleotide Array Sequence AnalysisPhylogenyPolymorphism, Single NucleotideSheepcross-breedinglivestock diversityshort tandem repeatsimple sequence repeatsingle nucleotide polymorphism

Identifiers

PMID31947936
PMCPMC7016564
OpenAlexW2998433695

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.