Evidence map›Paper›PMID 31945542›Full record

ArticleDNA repair2020

Oxidative DNA-protein crosslinks formed in mammalian cells by abasic site lyases involved in DNA repair.

Jason L Quiñones, Upasna Thapar, Samuel H Wilson, Dale A Ramsden, Bruce Demple

Open access · greenAbstract read
In one paragraph

Article in DNA repair, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Article
  3. The aflatoxin BNAR cancer · 2025
    Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Targeting DNA-Protein CrosslinksFrontiers in molecular biosciences · 2022
    Review
  11. Review
  12. OGG1 in the Kidney: Beyond Base Excision Repair.Oxidative medicine and cellular longevity · 2022
    Review
  13. Review
  14. Article
  15. Review
  16. Review
  17. Review
  18. Review
  19. DNA-Histone Cross-Links: Formation and Repair.Frontiers in cell and developmental biology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Jason L QuiñonesDepartment of Pharmacological Sciences, Stony Brook University, Renaissance School of Medicine, Basic Science Tower 8-140, Stony Brook, New York, 11794, USA.
Upasna ThaparDepartment of Pharmacological Sciences, Stony Brook University, Renaissance School of Medicine, Basic Science Tower 8-140, Stony Brook, New York, 11794, USA.
Samuel H WilsonLaboratory of Structural Biology, National Institute of Environmental Health Sciences, National Institutes of Health, PO Box 12233, Research Triangle Park, NC, 27709-2233, USA.
Dale A RamsdenLineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA.
Bruce DempleDepartment of Pharmacological Sciences, Stony Brook University, Renaissance School of Medicine, Basic Science Tower 8-140, Stony Brook, New York, 11794, USA. Electronic address: bruce.demple@stonybrook.edu.
Stony Brook School · USNational Institutes of Health · USStony Brook University · USUniversity of North Carolina at Chapel Hill · US

Funding

Biology of Mammalian Base Excision Repair and HIV-1 ReplicationZIAES050159 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI WILSON, SAMUEL H · 2009 to 2022
$29.7M
Mechanisms of Nucleic Acid Enzymes - Pol Beta, HIV-1 Reverse Transcriptase and Mammalian Base Repair EnzymesZIAES050158 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI WILSON, SAMUEL H · 2009 to 2022
$17.0M
Resolution of Complex Breaks by Nonhomologous End JoiningR01CA084442 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RAMSDEN, DALE A · 2000 to 2019
$4.8M
BIOLOGY OF MAMMALIAN BASE EXCISION REPAIRZ01ES050159 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI WILSON, SAMUEL H · 1997 to 2008
$4.5M
HUMAN REPAIR ENZYME FOR 3-FRAGMENTS IN OXIDIZED DNAR01GM040000 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI DEMPLE, BRUCE F. · 1988 to 2010
$2.8M
Single- and multinucleotide base excision DNA repair pathways in vivoR21CA198752 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI DEMPLE, BRUCE F. · 2015 to 2016
$374k
Formation and Fate of Oxidative DNA-Protein CrosslinksF31GM109747 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI QUINONES, JASON LUIS · 2014 to 2016
$90k
Intramural NIH HHS Z01 ES050159NCI NIH HHS R01 CA084442NCI NIH HHS R21 CA198752NIGMS NIH HHS F31 GM109747NIGMS NIH HHS R01 GM040000
6 · The paper itself

Abstract

Free radical attack on C1' of deoxyribose forms the oxidized abasic (AP) site 2-deoxyribonolactone (dL). In vitro, dL traps the major base excision DNA repair enzyme DNA polymerase beta (Polβ) in covalent DNA-protein crosslinks (DPC) via the enzyme's N-terminal lyase activity acting on 5'-deoxyribose-5-phosphate residues. We previously demonstrated formation of Polβ-DPC in cells challenged with oxidants generating significant levels of dL. Proteasome inhibition under 1,10-copper-ortho-phenanthroline (CuOP) treatment significantly increased Polβ-DPC accumulation and trapped ubiquitin in the DPC, with Polβ accounting for 60-70 % of the total ubiquitin signal. However, the identity of the remaining oxidative ubiquityl-DPC remained unknown. In this report, we surveyed whether additional AP lyases are trapped in oxidative DPC in mammalian cells in culture. Poly(ADP-ribose) polymerase 1 (PARP1), Ku proteins, DNA polymerase λ (Polλ), and the bifunctional 8-oxoguanine DNA glycosylase 1 (OGG1), were all trapped in oxidative DPC in mammalian cells. We also observed significant trapping of Polλ, PARP1, and OGG1 in cells treated with the alkylating agent methylmethane sulfonate (MMS), in addition to dL-inducing agents. Ku proteins, in contrast, followed a pattern of trapping similar to that for Polβ: MMS failed to produce Ku-DPC, while treatment with CuOP or (less effectively) H

Indexed as

DNA RepairCell Line, TumorDeoxyriboseDNA-(Apurinic or Apyrimidinic Site) LyaseDNA GlycosylasesDNA Polymerase betaHumansHydrogen PeroxideKu AutoantigenOxidation-ReductionPoly (ADP-Ribose) Polymerase-1DeoxyriboseDNA-(Apurinic or Apyrimidinic Site) LyaseDNA GlycosylasesDNA Polymerase betaDNA polymerase beta2Hydrogen PeroxideKu Autoantigenoxoguanine glycosylase 1, humanPARP1 protein, humanPoly (ADP-Ribose) Polymerase-11, 10-copper-ortho-phenanthroline2-deoxyribonolactoneAP lyaseDNA-protein crosslinksHydrogen peroxideMethylmethane sulfonate

Identifiers

PMID31945542
PMCPMC7065521
OpenAlexW3000547412

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.