Evidence map›Paper›PMID 31945054›Full record

ArticlePLoS biology2020

A proteomic atlas of senescence-associated secretomes for aging biomarker development.

Nathan Basisty, Abhijit Kale, Ok Hee Jeon, Chisaka Kuehnemann, Therese Payne, Chirag Rao, Anja Holtz, Samah Shah, Vagisha Sharma, Luigi Ferrucci and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 868 papers.

0numbers the graph read from it
0cells of the map it votes in
868citing papers in PubMed
123.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

868 citing papers in PubMed, 1,236 citations in OpenAlex.

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  19. AcutebioRxiv : the preprint server for biology · 2026
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808 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Nathan BasistyThe Buck Institute for Research on Aging, Novato, California, United States of America.ORCID 0000-0001-6173-1139
Abhijit KaleThe Buck Institute for Research on Aging, Novato, California, United States of America.ORCID 0000-0002-1105-6953
Ok Hee JeonThe Buck Institute for Research on Aging, Novato, California, United States of America.ORCID 0000-0002-3725-7526
Chisaka KuehnemannThe Buck Institute for Research on Aging, Novato, California, United States of America.
Therese PayneThe Buck Institute for Research on Aging, Novato, California, United States of America.
Chirag RaoThe Buck Institute for Research on Aging, Novato, California, United States of America.ORCID 0000-0002-6106-1144
Anja HoltzThe Buck Institute for Research on Aging, Novato, California, United States of America.ORCID 0000-0001-9856-002X
Samah ShahThe Buck Institute for Research on Aging, Novato, California, United States of America.
Vagisha SharmaUniversity of Washington, Seattle, Washington, United States of America.ORCID 0000-0003-1922-439X
Luigi FerrucciIntramural Research Program of the National Institute on Aging, NIH, Baltimore, Maryland, United States of America.
Judith CampisiThe Buck Institute for Research on Aging, Novato, California, United States of America.
Birgit SchillingThe Buck Institute for Research on Aging, Novato, California, United States of America.
Buck Institute for Research on Aging · USNational Institute on Aging · USUniversity of Washington · US

Funding

THE IMPACT OF CELLULAR DEFENSE ON THE ROLE OF Ku80 IN GENOME MAINTENANCE AND LONGP01AG017242 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI VIJG, JAN · 1999 to 2023
$46.1M
Quantitative Proteomics to Develop Robust Senescence-Related Biomarkers for AgingU01AG060906 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI SCHILLING, BIRGIT · 2018 to 2022
$4.0M
Cellular Senescence, astrocytes and Alzheimer's diseaseR01AG051729 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI CAMPISI, JUDITH · 2016 to 2020
$2.7M
TripleTOF 5600 High Resolution Mass SpectrometerS10OD016281 · OD · BUCK INSTITUTE FOR RESEARCH ON AGING · PI GIBSON, BRADFORD WAYNE · 2013 to 2013
$597k
NIA NIH HHS P01 AG017242NIA NIH HHS R01 AG051729NIA NIH HHS U01 AG060906NIH HHS S10 OD016281
6 · The paper itself

Abstract

The senescence-associated secretory phenotype (SASP) has recently emerged as a driver of and promising therapeutic target for multiple age-related conditions, ranging from neurodegeneration to cancer. The complexity of the SASP, typically assessed by a few dozen secreted proteins, has been greatly underestimated, and a small set of factors cannot explain the diverse phenotypes it produces in vivo. Here, we present the "SASP Atlas," a comprehensive proteomic database of soluble proteins and exosomal cargo SASP factors originating from multiple senescence inducers and cell types. Each profile consists of hundreds of largely distinct proteins but also includes a subset of proteins elevated in all SASPs. Our analyses identify several candidate biomarkers of cellular senescence that overlap with aging markers in human plasma, including Growth/differentiation factor 15 (GDF15), stanniocalcin 1 (STC1), and serine protease inhibitors (SERPINs), which significantly correlated with age in plasma from a human cohort, the Baltimore Longitudinal Study of Aging (BLSA). Our findings will facilitate the identification of proteins characteristic of senescence-associated phenotypes and catalog potential senescence biomarkers to assess the burden, originating stimulus, and tissue of origin of senescent cells in vivo.

Indexed as

AgingBiomarkersCells, CulturedCellular SenescenceDatabases, ProteinExosomesFemaleHumansPhenotypeProteomeProteomicsSecretory PathwayBiomarkersProteome

Identifiers

PMID31945054
PMCPMC6964821
OpenAlexW3000364256

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.