Evidence map›Paper›PMID 31944473›Full record

ArticleHuman mutation2020

POLD1 variants leading to reduced polymerase activity can cause hearing loss without syndromic features.

Doo-Yi Oh, Yoshihiro Matsumoto, Shin-Ichiro Kitajiri, Nayoung K D Kim, Min Young Kim, Ah Reum Kim, Mingyu Lee, Chung Lee, Alan E Tomkinson, Tatsuya Katsuno and 6 more

Open access · greenAbstract readCase Reports
In one paragraph

Article in Human mutation, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 3 countries.

Doo-Yi OhDepartment of Otorhinolaryngology, Seoul National University Bundang Hospital, Seongnam, Korea.ORCID 0000-0003-0043-7790
Yoshihiro MatsumotoDepartments of Internal Medicine and Molecular Genetics and Microbiology, and University of New Mexico Cancer Center, University of New Mexico, Albuquerque, New Mexico.
Shin-Ichiro KitajiriDepartment of Otolaryngology-Head and Neck Surgery, Kyoto University Graduate School of Medicine, Kyoto, Japan.
Nayoung K D KimSamsung Genome Institute, Samsung Medical Center, Seoul, Korea.
Min Young KimDepartment of Otorhinolaryngology, Seoul National University Bundang Hospital, Seongnam, Korea.
Ah Reum KimDepartment of Otorhinolaryngology, Seoul National University Hospital, College of Medicine, Seoul National University, Seoul, Korea.
Mingyu LeeDepartment of Pharmacology, Seoul National University College of Medicine, Seoul, Korea.
Chung LeeSamsung Genome Institute, Samsung Medical Center, Seoul, Korea.
Alan E TomkinsonDepartments of Internal Medicine and Molecular Genetics and Microbiology, and University of New Mexico Cancer Center, University of New Mexico, Albuquerque, New Mexico.
Tatsuya KatsunoDepartment of Otolaryngology-Head and Neck Surgery, Kyoto University Graduate School of Medicine, Kyoto, Japan.
So Young KimDepartment of Otorhinolaryngology, Seoul National University Hospital, College of Medicine, Seoul National University, Seoul, Korea.
Hyun-Woo ShinDepartment of Otorhinolaryngology, Seoul National University Hospital, College of Medicine, Seoul National University, Seoul, Korea.
Jin Hee HanDepartment of Otorhinolaryngology, Seoul National University Bundang Hospital, Seongnam, Korea.
Seungmin LeeDepartment of Otorhinolaryngology, Seoul National University Bundang Hospital, Seongnam, Korea.
Woong-Yang ParkSamsung Genome Institute, Samsung Medical Center, Seoul, Korea.
Byung Yoon ChoiDepartment of Otorhinolaryngology, Seoul National University Bundang Hospital, Seongnam, Korea.ORCID 0000-0001-5125-2118
Seoul National University Bundang Hospital · KRKyoto University · JPNamseoul University · KRSamsung Medical Center · KRSeoul National University Hospital · KRUniversity of New Mexico · USKorea Advanced Institute of Science and Technology · KR

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
NCI NIH HHS P01 CA092584
6 · The paper itself

Abstract

DNA polymerase δ, whose catalytic subunit is encoded by POLD1, is responsible for synthesizing the lagging strand of DNA. Single heterozygous POLD1 mutations in domains with polymerase and exonuclease activities have been reported to cause syndromic deafness as a part of multisystem metabolic disorder or predisposition to cancer. However, the phenotypes of diverse combinations of POLD1 genotypes have not been elucidated in humans. We found that five members of a multiplex family segregating autosomal recessive nonsyndromic sensorineural hearing loss (NS-SNHL) have revealed novel compound heterozygous POLD1 variants (p.Gly1100Arg and a presumptive null function variant, p.Ser197Hisfs*54). The recombinant p.Gly1100Arg polymerase δ showed a reduced polymerase activity by 30-40%, but exhibited normal exonuclease activity. The polymerase activity in cell extracts from the affected subject carrying the two POLD1 mutant alleles was about 33% of normal controls. We suggest that significantly decreased polymerase δ activity, but not a complete absence, with normal exonuclease activity could lead to NS-SNHL.

Indexed as

Genetic Association StudiesGenetic Predisposition to DiseaseGenetic VariationAdultAllelesAmino Acid SequenceAmino Acid SubstitutionBiomarkersDNA Polymerase IIIEnzyme ActivationExome SequencingFemaleGenotypeHearing LossHumansMaleBiomarkersDNA Polymerase IIIPOLD1 protein, humanexonucleaseNS-SNHLPOLD1polymerasePol δ

Identifiers

PMID31944473
PMCPMC7398151
OpenAlexW2999409817

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.