Evidence map›Paper›PMID 31943082›Full record

ArticleHuman molecular genetics2020

SPECC1L regulates palate development downstream of IRF6.

Everett G Hall, Luke W Wenger, Nathan R Wilson, Sraavya S Undurty-Akella, Jennifer Standley, Eno-Abasi Augustine-Akpan, Youssef A Kousa, Diana S Acevedo, Jeremy P Goering, Lenore Pitstick and 18 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 9 institutions in 4 countries.

Everett G HallDepartment of Anatomy and Cell Biology, University of Kansas Medical Center, Kansas City, KS 66160, USA.
Luke W WengerDepartment of Anatomy and Cell Biology, University of Kansas Medical Center, Kansas City, KS 66160, USA.
Nathan R WilsonDepartment of Anatomy and Cell Biology, University of Kansas Medical Center, Kansas City, KS 66160, USA.
Sraavya S Undurty-AkellaDepartment of Pediatrics, Craniofacial Anomalies Research Center, University of Iowa, Iowa City, IA 52242, USA.
Jennifer StandleyDepartment of Pediatrics, Craniofacial Anomalies Research Center, University of Iowa, Iowa City, IA 52242, USA.
Eno-Abasi Augustine-AkpanDepartment of Oral Pathology, Radiology and Medicine/Dow Institute for Dental Research, College of Dentistry, University of Iowa, Iowa City, IA 52242, USA.
Youssef A KousaDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA.
Diana S AcevedoDepartment of Anatomy and Cell Biology, University of Kansas Medical Center, Kansas City, KS 66160, USA.
Jeremy P GoeringDepartment of Anatomy and Cell Biology, University of Kansas Medical Center, Kansas City, KS 66160, USA.
Lenore PitstickDepartment of Biochemistry, Midwestern University, Downers Grove, IL 60515, USA.
Nagato NatsumeDivision of Research and Treatment for Oral and Maxillofacial Congenital Anomalies, Aichi Gakuin University Hospital, 2-11 Suemori-Dori, Nagoya, Chikusa-ku, Japan.
Shahnawaz M ParoyaDepartment of Anatomy and Cell Biology, University of Kansas Medical Center, Kansas City, KS 66160, USA.
Tamara D BuschDepartment of Pediatrics, Craniofacial Anomalies Research Center, University of Iowa, Iowa City, IA 52242, USA.
Masaaki ItoDivision of Research and Treatment for Oral and Maxillofacial Congenital Anomalies, Aichi Gakuin University Hospital, 2-11 Suemori-Dori, Nagoya, Chikusa-ku, Japan.
Akihiro MoriDivision of Research and Treatment for Oral and Maxillofacial Congenital Anomalies, Aichi Gakuin University Hospital, 2-11 Suemori-Dori, Nagoya, Chikusa-ku, Japan.
Hideto ImuraDivision of Research and Treatment for Oral and Maxillofacial Congenital Anomalies, Aichi Gakuin University Hospital, 2-11 Suemori-Dori, Nagoya, Chikusa-ku, Japan.
Laura E Schultz-RogersCenter for Individualized Medicine, Mayo Clinic, Rochester, MN 55905, USA.
Eric W KleeCenter for Individualized Medicine, Mayo Clinic, Rochester, MN 55905, USA.
Dusica Babovic-VuksanovicDepartment of Clinical Genomics, Mayo Clinic, Rochester, MN 55905, USA.
Sarah A KrocDepartment of Clinical Genomics, Mayo Clinic, Rochester, MN 55905, USA.
Wasiu L AdeyemoDepartment of Oral and Maxillofacial Surgery, College of Medicine, University of Lagos, Lagos, PMB 12003, Nigeria.
Mekonen A EsheteDepartment of Plastic and Reconstructive Surgery, Addis Ababa University, Addis Ababa, PO Box 26493, Ethiopia.
Bryan C BjorkDepartment of Biochemistry, Midwestern University, Downers Grove, IL 60515, USA.
Satoshi SuzukiDepartment of Pediatrics, Craniofacial Anomalies Research Center, University of Iowa, Iowa City, IA 52242, USA.
Jeffrey C MurrayDepartment of Pediatrics, Craniofacial Anomalies Research Center, University of Iowa, Iowa City, IA 52242, USA.
Brian C SchutteDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA.
Azeez ButaliDepartment of Oral Pathology, Radiology and Medicine/Dow Institute for Dental Research, College of Dentistry, University of Iowa, Iowa City, IA 52242, USA.
Irfan SaadiDepartment of Anatomy and Cell Biology, University of Kansas Medical Center, Kansas City, KS 66160, USA.
University of Iowa · USUniversity of Kansas Medical Center · USAichi Gakuin University · JPMayo Clinic · USMayo Clinic in Florida · USMichigan State University · USMidwestern University · USAddis Ababa University · ETUniversity of Lagos · NG

Funding

Mentoring CoreP20GM103418 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI John A Stanford · 2012 to 2026
$63.0M
Transgenic and Gener-Targeting CoreP20GM104936 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI SAADI, IRFAN · 2012 to 2016
$10.9M
Using PCORnet to Expand the DS-CONNECT Cohort Through Healthcare System Recruitment, Incorporating Electronic Health Records, and Assessing Self-DeterminationU54HD090216 · NICHD · UNIVERSITY OF KANSAS LAWRENCE · PI COLOMBO, JOHN A. · 2016 to 2020
$6.2M
Molecular Regulation of Cell Development and Differentiation Phase III COBREP30GM122731 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI ABRAHAMSON, DALE R · 2017 to 2021
$5.6M
The Role of SPECC1L cytoskeletal protein in craniofacial development and malformationR01DE026172 · NIDCR · UNIVERSITY OF KANSAS MEDICAL CENTER · PI SAADI, IRFAN · 2016 to 2020
$1.9M
Viral Neurobiology in the Prenatal BrainK08NS119882 · NINDS · CHILDREN'S RESEARCH INSTITUTE · PI Youssef A Kousa · 2022 to 2026
$1.1M
Super resolution microscope for the imaging core facilityS10OD023625 · OD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI NISHIMUNE, HIROSHI · 2019 to 2019
$987k
Investigating the Role of Specc1l in Cranial Neural Crest Cell Function and Palate ClosureF31DE027284 · NIDCR · UNIVERSITY OF KANSAS MEDICAL CENTER · PI HALL, EVERETT GORDON · 2017 to 2018
$63k
Role of Irf6 in palatal epitheliumF31DE022696 · NIDCR · MICHIGAN STATE UNIVERSITY · PI KOUSA, YOUSSEF A · 2012 to 2013
$60k
NICHD NIH HHS U54 HD090216NIDCR NIH HHS F31 DE022696NIDCR NIH HHS F31 DE027284NIDCR NIH HHS R01 DE026172NIGMS NIH HHS P20 GM103418NIGMS NIH HHS P20 GM104936NIGMS NIH HHS P30 GM122731NIH HHS S10 OD023625NINDS NIH HHS K08 NS119882
6 · The paper itself

Abstract

SPECC1L mutations have been identified in patients with rare atypical orofacial clefts and with syndromic cleft lip and/or palate (CL/P). These mutations cluster in the second coiled-coil and calponin homology domains of SPECC1L and severely affect the ability of SPECC1L to associate with microtubules. We previously showed that gene-trap knockout of Specc1l in mouse results in early embryonic lethality. We now present a truncation mutant mouse allele, Specc1lΔC510, that results in perinatal lethality. Specc1lΔC510/ΔC510 homozygotes showed abnormal palate rugae but did not show cleft palate. However, when crossed with a gene-trap allele, Specc1lcGT/ΔC510 compound heterozygotes showed a palate elevation delay with incompletely penetrant cleft palate. Specc1lcGT/ΔC510 embryos exhibit transient oral epithelial adhesions at E13.5, which may delay shelf elevation. Consistent with oral adhesions, we show periderm layer abnormalities, including ectopic apical expression of adherens junction markers, similar to Irf6 hypomorphic mutants and Arhgap29 heterozygotes. Indeed, SPECC1L expression is drastically reduced in Irf6 mutant palatal shelves. Finally, we wanted to determine if SPECC1L deficiency also contributed to non-syndromic (ns) CL/P. We sequenced 62 Caucasian, 89 Filipino, 90 Ethiopian, 90 Nigerian and 95 Japanese patients with nsCL/P and identified three rare coding variants (p.Ala86Thr, p.Met91Iso and p.Arg546Gln) in six individuals. These variants reside outside of SPECC1L coiled-coil domains and result in milder functional defects than variants associated with syndromic clefting. Together, our data indicate that palate elevation is sensitive to deficiency of SPECC1L dosage and function and that SPECC1L cytoskeletal protein functions downstream of IRF6 in palatogenesis.

Indexed as

MutationAnimalsCalponinsCleft PalateFemaleHumansInterferon Regulatory FactorsMiceMice, Inbred C57BLMice, KnockoutPhosphoproteinsCalponinsInterferon Regulatory FactorsIRF6 protein, humanIRF6 protein, mousePhosphoproteinsSPECC1L protein, human

Identifiers

PMID31943082
PMCPMC7104672
OpenAlexW2999266150

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.