Evidence map›Paper›PMID 31943067›Full record

ArticleHuman molecular genetics2020

Prediagnostic breast milk DNA methylation alterations in women who develop breast cancer.

Lucas A Salas, Sara N Lundgren, Eva P Browne, Elizabeth C Punska, Douglas L Anderton, Margaret R Karagas, Kathleen F Arcaro, Brock C Christensen

Open access · hybridAbstract read
In one paragraph

Article in Human molecular genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 2 pooled it
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 2 syntheses or guidelines pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
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  7. Article
  8. Application of Novel Breast Biospecimen Cell-Type Adjustment Identifies Shared DNA Methylation Alterations in Breast Tissue and Milk with Breast Cancer-Risk Factors.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2023
    Article
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  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Lucas A SalasDepartment of Epidemiology, Geisel School of Medicine at Dartmouth, Hanover, NH 03766, USA.
Sara N LundgrenDepartment of Epidemiology, Geisel School of Medicine at Dartmouth, Hanover, NH 03766, USA.
Eva P BrowneDepartment of Veterinary & Animal Sciences, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Elizabeth C PunskaDepartment of Veterinary & Animal Sciences, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Douglas L AndertonDepartment of Sociology, University of South Carolina, Columbus, SC 29208, USA.
Margaret R KaragasDepartment of Epidemiology, Geisel School of Medicine at Dartmouth, Hanover, NH 03766, USA.
Kathleen F ArcaroDepartment of Veterinary & Animal Sciences, University of Massachusetts Amherst, Amherst, MA 01003, USA.
Brock C ChristensenDepartment of Epidemiology, Geisel School of Medicine at Dartmouth, Hanover, NH 03766, USA.
Dartmouth College · USUniversity of Massachusetts Amherst · USUniversity of South Carolina · US

Funding

Translational Engineering in Cancer (TEC)P30CA023108 · NCI · DARTMOUTH COLLEGE · PI Steven D Leach · 1985 to 2026
$91.3M
Relation Between In-utero Vitamin D and Immune Function in Early Childhood P20GM104416 · NIGMS · DARTMOUTH COLLEGE · PI CHRISTENSEN, BROCK CLARKE · 2013 to 2022
$23.7M
Project 3: Placental Biomarkers of Exposure and Outcome (Marsit)P01ES022832 · NIEHS · DARTMOUTH COLLEGE · PI MURRAY, CAROLYN J · 2013 to 2018
$4.7M
Fruit and vegetable intervention in lactating women to reduce breast cancer risk: effects on breast cell DNA methylation, breast inflammation, and weightR01CA230478 · NCI · UNIVERSITY OF MASSACHUSETTS AMHERST · PI ARCARO, KATHLEEN FRANCES, SIBEKO, LINDIWE N · 2019 to 2023
$3.2M
(PQ3) Immune epigenetic biomarkers of bladder cancer outcomesR01CA216265 · NCI · DARTMOUTH COLLEGE · PI CHRISTENSEN, BROCK CLARKE · 2017 to 2021
$2.9M
NCI NIH HHS R01 CA216265NCI NIH HHS R01 CA230478NIEHS NIH HHS P01 ES022832NIGMS NIH HHS P20 GM104416
6 · The paper itself

Abstract

Prior candidate gene studies have shown tumor suppressor DNA methylation in breast milk related with history of breast biopsy, an established risk factor for breast cancer. To further establish the utility of breast milk as a tissue-specific biospecimen for investigations of breast carcinogenesis, we measured genome-wide DNA methylation in breast milk from women with and without a diagnosis of breast cancer in two independent cohorts. DNA methylation was assessed using Illumina HumanMethylation450k in 87 breast milk samples. Through an epigenome-wide association study we explored CpG sites associated with a breast cancer diagnosis in the prospectively collected milk samples from the breast that would develop cancer compared with women without a diagnosis of breast cancer using linear mixed effects models adjusted for history of breast biopsy, age, RefFreeCellMix cell estimates, time of delivery, array chip and subject as random effect. We identified 58 differentially methylated CpG sites associated with a subsequent breast cancer diagnosis (q-value <0.05). Nearly all CpG sites associated with a breast cancer diagnosis were hypomethylated in cases compared with controls and were enriched for CpG islands. In addition, inferred repeat element methylation was lower in breast milk DNA from cases compared to controls, and cases exhibited increased estimated epigenetic mitotic tick rate as well as DNA methylation age compared with controls. Breast milk has utility as a biospecimen for prospective assessment of disease risk, for understanding the underlying molecular basis of breast cancer risk factors and improving primary and secondary prevention of breast cancer.

Indexed as

DNA MethylationEpigenesis, GeneticGene Expression Regulation, NeoplasticAdolescentAdultBreast NeoplasmsCase-Control StudiesFemaleHumansMiddle AgedMilk, HumanPrognosisProspective StudiesYoung Adult

Identifiers

PMID31943067
PMCPMC7068171
OpenAlexW2999179630

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.