Evidence map›Paper›PMID 31941912›Full record

ArticleNature communications2020

Evolutionary selection of biofilm-mediated extended phenotypes in Yersinia pestis in response to a fluctuating environment.

Yujun Cui, Boris V Schmid, Hanli Cao, Xiang Dai, Zongmin Du, W Ryan Easterday, Haihong Fang, Chenyi Guo, Shanqian Huang, Wanbing Liu and 14 more

Abstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Anti-infective compounds forSustainable microbiology · 2026
    Review
  2. Retracing the path of evolution: polymorphisms ofEmerging microbes & infections · 2025
    Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Tad pili contribute to the virulence and biofilm formation of virulentFrontiers in cellular and infection microbiology · 2024
    Article
  8. Review
  9. Article
  10. The complex genomic diversity ofEcology and evolution · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Zoonoses (Shannon, Ireland) · 2023
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Yujun CuiState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, 100071, China.
Boris V SchmidCentre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Blindern, N-0316, Oslo, Norway.ORCID http://orcid.org/0000-0003-0452-623X
Hanli CaoThe Center for Disease Control and Prevention of Xinjiang Uygur Autonomous Region, Urumqi, 830002, China.
Xiang DaiThe Center for Disease Control and Prevention of Xinjiang Uygur Autonomous Region, Urumqi, 830002, China.
Zongmin DuState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, 100071, China.
W Ryan EasterdayCentre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Blindern, N-0316, Oslo, Norway.
Haihong FangState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, 100071, China.
Chenyi GuoState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, 100071, China.
Shanqian HuangState Key Laboratory of Remote Sensing Science, College of Global Change and Earth System Science, Beijing Normal University, Beijing, 100875, China.
Wanbing LiuState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, 100071, China.
Zhizhen QiKey Laboratory for Plague Prevention and Control of Qinghai Province, Qinghai Institute for Endemic Diseases Prevention and Control, Xining, 811602, China.
Yajun SongState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, 100071, China.ORCID http://orcid.org/0000-0002-6628-2747
Huaiyu TianState Key Laboratory of Remote Sensing Science, College of Global Change and Earth System Science, Beijing Normal University, Beijing, 100875, China.
Min WangState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, 100071, China.
Yarong WuState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, 100071, China.
Bing XuState Key Laboratory of Remote Sensing Science, College of Global Change and Earth System Science, Beijing Normal University, Beijing, 100875, China.
Chao YangState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, 100071, China.ORCID http://orcid.org/0000-0003-0626-0586
Jing YangState Key Laboratory of Remote Sensing Science, College of Global Change and Earth System Science, Beijing Normal University, Beijing, 100875, China.
Xianwei YangState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, 100071, China.ORCID http://orcid.org/0000-0003-4388-9674
Qingwen ZhangKey Laboratory for Plague Prevention and Control of Qinghai Province, Qinghai Institute for Endemic Diseases Prevention and Control, Xining, 811602, China.
Kjetill S JakobsenCentre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Blindern, N-0316, Oslo, Norway. k.s.jakobsen@ibv.uio.no.ORCID http://orcid.org/0000-0002-8861-5397
Yujiang ZhangThe Center for Disease Control and Prevention of Xinjiang Uygur Autonomous Region, Urumqi, 830002, China. xjsyzhang@163.com.
Nils Chr StensethCentre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Blindern, N-0316, Oslo, Norway. n.c.stenseth@ibv.uio.no.ORCID http://orcid.org/0000-0002-1591-5399
Ruifu YangState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, 100071, China. ruifuyang@gmail.com.ORCID http://orcid.org/0000-0003-3219-7269

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Yersinia pestis is transmitted from fleas to rodents when the bacterium develops an extensive biofilm in the foregut of a flea, starving it into a feeding frenzy, or, alternatively, during a brief period directly after feeding on a bacteremic host. These two transmission modes are in a trade-off regulated by the amount of biofilm produced by the bacterium. Here by investigating 446 global isolated Y. pestis genomes, including 78 newly sequenced isolates sampled over 40 years from a plague focus in China, we provide evidence for strong selection pressures on the RNA polymerase ω-subunit encoding gene rpoZ. We demonstrate that rpoZ variants have an increased rate of biofilm production in vitro, and that they evolve in the ecosystem during colder and drier periods. Our results support the notion that the bacterium is constantly adapting-through extended phenotype changes in the fleas-in response to climate-driven changes in the niche.

Indexed as

AnimalsBacterial ProteinsBiofilmsBiological EvolutionChinaClimateDisease ReservoirsDNA-Directed RNA PolymerasesEcosystemFlea InfestationsGenetic VariationGenome, BacterialHost-Parasite InteractionsHost-Pathogen InteractionsMarmotaPhenotypeBacterial ProteinsDNA-Directed RNA Polymerases

Identifiers

PMID31941912
PMCPMC6962365

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.