Evidence map›Paper›PMID 31941782›Full record

ArticleJournal of virology2020

Sensitivity of Alphaviruses to G3BP Deletion Correlates with Efficiency of Replicase Polyprotein Processing.

Benjamin Götte, Age Utt, Rennos Fragkoudis, Andres Merits, Gerald M McInerney

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
0.5field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.

  1. Pooled it
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  12. Stress granule formation helps to mitigate neurodegeneration.bioRxiv : the preprint server for biology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Benjamin Götte *Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, Sweden.
Age Utt *Institute of Technology, University of Tartu, Tartu, Estonia.
Rennos FragkoudisThe Pirbright Institute, Woking, United Kingdom.
Andres Merits *Institute of Technology, University of Tartu, Tartu, Estonia andres.merits@ut.ee gerald.mcinerney@ki.se.ORCID 0000-0001-8193-0071
Gerald M McInerney *Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, Sweden andres.merits@ut.ee gerald.mcinerney@ki.se.ORCID 0000-0003-2257-7241
Karolinska Institutet · SEUniversity of Tartu · EEThe Pirbright Institute · GB

Funding

Medical Research Council MC_PC_16028Wellcome TrustWellcome Trust 200171/Z/15/Z
6 · The paper itself

Abstract

We present a comprehensive overview of the dependency of several Old World alphaviruses for the host protein G3BP. Based on their replication ability in G3BP-deleted cells, Old World alphaviruses can be categorized into two groups, being either resistant or sensitive to G3BP deletion. We observed that all sensitive viruses have an Arg residue at the P4 position of the cleavage site between the nonstructural protein P1 (nsP1) and nsP2 regions of the replicase precursor polyprotein (1/2 site), while a different residue is found at this site in viruses resistant to G3BP deletion. Swapping this residue between resistant and sensitive viruses also switches the G3BP deletion sensitivity. In the absence of G3BP, chikungunya virus (CHIKV) replication is at the limit of detection. The P4 Arg-to-His substitution partially rescues this defect. The P4 residue of the 1/2 site is known to play a regulatory role during processing at this site, and we found that if processing is blocked, the influence of the P4 residue on the sensitivity to G3BP deletion is abolished. Immunofluorescence experiments with CHIKV replicase with manipulated processing indicate that the synthesis of double-stranded RNA is defective in the absence of G3BP and suggest a role of G3BP during negative-strand RNA synthesis. This study provides a functional link between the host protein G3BP and the P4 residue of the 1/2 site for viral RNA replication of Old World alphaviruses. While this suggests a link between G3BP proteins and viral replicase polyprotein processing, we propose that G3BP proteins do not have a regulatory role during polyprotein processing.

Indexed as

Gene DeletionAedesAnimalsAntiviral AgentsCell Line, TumorChikungunya FeverChikungunya virusCricetinaeDNA HelicasesGenome, ViralHumansPoly-ADP-Ribose Binding ProteinsPolyproteinsProtein BindingRNA-Dependent RNA PolymeraseRNA, Double-StrandedAntiviral AgentsDNA HelicasesG3BP1 protein, humanPoly-ADP-Ribose Binding ProteinsPolyproteinsRNA-Dependent RNA PolymeraseRNA, Double-StrandedRNA HelicasesRNA Recognition Motif ProteinsRNA, ViralViral Nonstructural Proteinspolyprotein processingreplication complexesRNA replicationvirus-host interactions

Identifiers

PMID31941782
PMCPMC7081891
OpenAlexW2999294227

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.