Evidence map›Paper›PMID 31941723›Full record

ArticleG3 (Bethesda, Md.)2020

Experimental DNA Demethylation Associates with Changes in Growth and Gene Expression of Oak Tree Seedlings.

Luke Browne, Alayna Mead, Courtney Horn, Kevin Chang, Zeynep A Celikkol, Claudia L Henriquez, Feiyang Ma, Eric Beraut, Rachel S Meyer, Victoria L Sork

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Multiomics Molecular Research into the Recalcitrant and OrphanInternational journal of molecular sciences · 2022
    Review
  6. Article
  7. How is epigenetics predicted to contribute to climate change adaptation? What evidence do we need?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 3 countries.

Luke BrowneDepartment of Ecology and Evolutionary Biology.ORCID 0000-0002-2239-3007
Alayna MeadDepartment of Ecology and Evolutionary Biology.ORCID 0000-0002-1510-8327
Courtney HornDepartment of Ecology and Evolutionary Biology.
Kevin ChangDepartment of Ecology and Evolutionary Biology.
Zeynep A CelikkolDepartment of Ecology and Evolutionary Biology.ORCID 0000-0003-3322-218X
Claudia L HenriquezDepartment of Ecology and Evolutionary Biology.ORCID 0000-0001-7030-5051
Feiyang MaMolecular Biology Institute.
Eric BerautDepartment of Ecology and Evolutionary Biology.ORCID 0000-0002-4443-6282
Rachel S MeyerDepartment of Ecology and Evolutionary Biology.ORCID 0000-0002-4907-5797
Victoria L SorkDepartment of Ecology and Evolutionary Biology, vlsork@ucla.edu.
Institute of Molecular Biology · BGUniversity of California, Los Angeles · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epigenetic modifications such as DNA methylation, where methyl groups are added to cytosine base pairs, have the potential to impact phenotypic variation and gene expression, and could influence plant response to changing environments. One way to test this impact is through the application of chemical demethylation agents, such as 5-Azacytidine, which inhibit DNA methylation and lead to a partial reduction in DNA methylation across the genome. In this study, we treated 5-month-old seedlings of the tree,

Indexed as

DNA DemethylationGene Expression Regulation, PlantAzacitidineMicrobiotaQuercusSeedlingsSoil MicrobiologyAzacitidine5-AzacytidineDNA methylationgene expressionleaf morphologyQuercus lobata

Identifiers

PMID31941723
PMCPMC7056980
OpenAlexW2998848371

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.