Evidence map›Paper›PMID 31941449›Full record

ArticleBMC plant biology2020

Copper-induced concomitant increases in photosynthesis, respiration, and C, N and S assimilation revealed by transcriptomic analyses in Ulva compressa (Chlorophyta).

Daniel Laporte, Felipe Rodríguez, Alberto González, Antonio Zúñiga, Eduardo Castro-Nallar, Claudio A Sáez, Alejandra Moenne

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
4.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  4. The Genome of the Marine AlgaInternational journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Daniel LaporteLaboratory of Marine Biotechnology, Faculty of Chemistry and Biology, University of Santiago of Chile, Alameda, 3363, Santiago, Chile.
Felipe RodríguezLaboratory of Marine Biotechnology, Faculty of Chemistry and Biology, University of Santiago of Chile, Alameda, 3363, Santiago, Chile.
Alberto GonzálezLaboratory of Marine Biotechnology, Faculty of Chemistry and Biology, University of Santiago of Chile, Alameda, 3363, Santiago, Chile.
Antonio ZúñigaLaboratory of Marine Biotechnology, Faculty of Chemistry and Biology, University of Santiago of Chile, Alameda, 3363, Santiago, Chile.
Eduardo Castro-NallarCenter of Bioinformatics and Integrative Biology, Faculty of Life Sciences, University Andrés Bello, República 330, Santiago, Chile.
Claudio A SáezHUB AMBIENTAL UPLA, Vicerrectoría de Investigación, Postgrado e Innovación, University of Playa Ancha, Avenida Carvallo 270, 2340000, Valparaíso, Chile.
Alejandra MoenneLaboratory of Marine Biotechnology, Faculty of Chemistry and Biology, University of Santiago of Chile, Alameda, 3363, Santiago, Chile. alejandra.moenne@usach.cl.ORCID http://orcid.org/0000-0002-7309-9713
Universidad de Santiago de Chile · CLUniversidad Andrés Bello · CLUniversidad de Playa Ancha de Ciencias de la Educación · CL

Funding

Fondo Nacional de Desarrollo Científico y Tecnológico 1160013Fondo Nacional de Desarrollo Científico y Tecnológico 1160369Fondo Nacional de Desarrollo Científico y Tecnológico 3170511
6 · The paper itself

Abstract

backgroundThe marine alga Ulva compressa is the dominant species in copper-polluted coastal areas in northern Chile. It has been shown that the alga tolerates micromolar concentrations of copper and accumulates copper at the intracellular level. Transcriptomic analyses were performed using total RNA of the alga cultivated with 10 μ M copper for 0, 1, 3 and 5 days using RNA-seq in order to identify processes involved in copper tolerance.

resultsThe levels of transcripts encoding proteins belonging to Light Harvesting Complex II (LHCII), photosystem II (PSII), cytochrome b6f, PSI, LHCI, ATP synthase and proteins involved in repair of PSII and protection of PSI were increased in the alga cultivated with copper. In addition, the level of transcripts encoding proteins of mitochondrial electron transport chain, ATP synthase, and enzymes involved in C, N and S assimilation were also enhanced. The higher percentages of increase in the level of transcripts were mainly observed at days 3 and 5. In contrast, transcripts involved protein synthesis and degradation, signal transduction, and replication and DNA repair, were decreased. In addition, net photosynthesis and respiration increased in the alga cultivated with copper, mainly at days 1 to 3. Furthermore, the activities of enzymes involved in C, N and S assimilation, rubisco, glutamine synthase and cysteine synthase, respectively, were also increased, mainly at days 1 and 3.

conclusionsThe marine alga U. compressa tolerates copper excess through a concomitant increase in expression of proteins involved in photosynthesis, respiration, and C, N and S assimilation, which represents an exceptional mechanism of copper tolerance.

Indexed as

Algal ProteinsCarbonCopperGene Expression ProfilingNitrogenOxygenPhotosynthesisSulfurUlvaWater Pollutants, ChemicalAlgal ProteinsCarbonCopperNitrogenOxygenSulfurWater Pollutants, ChemicalCopperMarine algaPhotosynthesisRespirationTranscriptomic analysesUlva compressa

Identifiers

PMID31941449
PMCPMC6964094
OpenAlexW3000536723

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.