Evidence map›Paper›PMID 31941439›Full record

ArticleBMC gastroenterology2020

Deficiency of Gankyrin in the small intestine is associated with augmented colitis accompanied by altered bacterial composition of intestinal microbiota.

Toshiharu Sakurai, Hiroki Nishiyama, Tomoyuki Nagai, Susumu Goto, Hiroyuki Ogata, Masatoshi Kudo

Open access · goldAbstract read
In one paragraph

Article in BMC gastroenterology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 1 country.

Toshiharu SakuraiDepartment of Gastroenterology and Hepatology, Kindai University Faculty of Medicine, 377-2, Osaka-Sayama, Osaka, 589-8511, Japan. sakurai@med.kindai.ac.jp.
Hiroki NishiyamaInstitute for Chemical Research, Kyoto University, Uji, 611-0011, Japan.
Tomoyuki NagaiDepartment of Gastroenterology and Hepatology, Kindai University Faculty of Medicine, 377-2, Osaka-Sayama, Osaka, 589-8511, Japan.
Susumu GotoDatabase Center for Life Science, Joint-Support Center for Data Science Research, Research Organization of Information and Systems, Wakashiba, Kashiwa, Chiba, 277-0871, Japan.
Hiroyuki OgataInstitute for Chemical Research, Kyoto University, Uji, 611-0011, Japan. ogata@kuicr.kyoto-u.ac.jp.
Masatoshi KudoDepartment of Gastroenterology and Hepatology, Kindai University Faculty of Medicine, 377-2, Osaka-Sayama, Osaka, 589-8511, Japan.
Kindai University · JPKindai University Hospital · JPKyoto University · JPKyoto University Institute for Chemical ResearchResearch Organization of Information and Systems · JP

Funding

Japan Society for the Promotion of Science 16KT0020Japan Society for the Promotion of Science 17H06404Japan Society for the Promotion of Science 17K09396Japan Society for the Promotion of Science 19J14228Japan Society for the Promotion of Science JP26460979
6 · The paper itself

Abstract

backgroundGankyrin (GK) is an oncoprotein which regulates inflammatory responses and its inhibition is considered as a possible anti-inflammatory therapy for inflammatory bowel disease (IBD).

methodsIn this study, we investigated the role of GK in epithelial cells using mice with intestinal epithelial cell-specific GK deletion in (i) the entire small intestine and colon (Villin-Cre;Gankyrin

resultUnexpectedly, GK-deficiency in the upper small bowel augmented inflammatory activity compared with control mice when colitis was induced with dextran sodium sulfate. Biochemical analyses have revealed GK-deficiency to have caused reduction in the expression of antimicrobial peptides, α-Defensin-5 and -6, in the upper small bowel. Examination of human samples have further confirmed that the reduction of GK expression in the small bowel is associated with colonic involvement in human Crohn's disease. Through the sequencing of bacterial 16S rRNA gene amplicons, bacteria potentially deleterious to intestinal homeostasis such as Helicobacter japonicum and Bilophila were found to be over-represented in colitis induced Villin-Cre;Gankyrin

conclusionThese results highlight the distinct site dependence of the pro- and anti-inflammatory functions of GK and provide important insights into the pathogenesis of IBD.

Indexed as

AnimalsColitisColonCrohn DiseaseDextran SulfateDisease Models, AnimalEpithelial CellsGastrointestinal MicrobiomeGene DeletionHumansIntestinal MucosaIntestinesIntestine, SmallMiceRNA, Ribosomal, 16STranscription FactorsDextran Sulfategankyrin protein, mouseRNA, Ribosomal, 16STranscription FactorsBilophilaGankyrinHelicobacter japonicumInflammatory bowel diseaseMicrobiota

Identifiers

PMID31941439
PMCPMC6964040
OpenAlexW3002807943

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.