Evidence map›Paper›PMID 31940489›Full record

ArticleCell reports2020

Large 1p36 Deletions Affecting Arid1a Locus Facilitate Mycn-Driven Oncogenesis in Neuroblastoma.

Jesus García-López, Kirby Wallace, Joel H Otero, Rachelle Olsen, Yong-Dong Wang, David Finkelstein, Brian L Gudenas, Jerold E Rehg, Paul Northcott, Andrew M Davidoff and 1 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in Cell reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06502210 (Identification of New Gene Spliceosomes in Neuroblastoma and Their Translational Application in Clinical Accurate Diagnosis and Therapy), which is not on this map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06502210 unknown statusnot on this mapstarted 2024, after this paper: background citation

Identification of New Gene Spliceosomes in Neuroblastoma and Their Translational Application in Clinical Accurate Diagnosis and Therapy

Typeobservational_patient_registrySponsorAffiliated Hospital of Nantong UniversityRan2024 to 2024Enrolled20ConditionsNeuroblastomaArmsPersonalized surgical therapy of neuroblastoma
3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 47 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Epigenetic crosstalk in neuroblastoma development and progression.Frontiers in cell and developmental biology · 2026
    Review
  5. Review
  6. Molecular interplay of ARID1A in gastrointestinal cancers.Medical oncology (Northwood, London, England) · 2025
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Gene utility recapitulates chromosomal aberrancies in advanced stage neuroblastoma.Computational and structural biotechnology journal · 2022
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Jesus García-LópezDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, USA. Electronic address: jesus.garcialopez@stjude.org.
Kirby WallaceDepartment of Surgery, St. Jude Children's Research Hospital, Memphis, TN 38105, USA; Genetics, Genomics & Informatics, The University of Tennessee Health Science Center (UTHSC), Memphis, TN 38103, USA.
Joel H OteroDepartment of Hematology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Rachelle OlsenDepartment of Oncological Sciences, Huntsman Cancer Institute, Salt Lake City, UT 84112, USA.
Yong-Dong WangComputational Biology Department, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
David FinkelsteinComputational Biology Department, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Brian L GudenasDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Jerold E RehgPathology Department, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Paul NorthcottDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Andrew M DavidoffDepartment of Surgery, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Kevin W FreemanGenetics, Genomics & Informatics, The University of Tennessee Health Science Center (UTHSC), Memphis, TN 38103, USA. Electronic address: kfreem22@uthsc.edu.
St. Jude Children's Research Hospital · USHuntsman Cancer Institute · USUniversity of Tennessee Health Science Center · US

Funding

Dissecting the contribution of the transcriptional regulators of SNS fate to neuroblastoma oncogenesisR01CA216394 · NCI · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI FREEMAN, KEVIN W. · 2018 to 2022
$1.7M
NCI NIH HHS R01 CA216394
6 · The paper itself

Abstract

Loss of heterozygosity (LOH) at 1p36 occurs in multiple cancers, including neuroblastoma (NBL). MYCN amplification and 1p36 deletions tightly correlate with markers of tumor aggressiveness in NBL. Although distal 1p36 losses associate with single-copy MYCN tumors, larger deletions correlate with MYCN amplification, indicating two tumor suppressor regions in 1p36, only one of which facilitates MYCN oncogenesis. To better define this region, we genome-edited the syntenic 1p36 locus in primary mouse neural crest cells (NCCs), a putative NBL cell of origin. In in vitro cell transformation assays, we show that Chd5 loss confers most of the MYCN-independent tumor suppressor effects of 1p36 LOH. In contrast, MYCN-driven tumorigenesis selects for NCCs with Arid1a deletions from a pool of NCCs with randomly sized 1p36 deletions, establishing Arid1a as the MYCN-associated tumor suppressor. Our findings reveal that Arid1a loss collaborates with oncogenic MYCN and better define the tumor suppressor functions of 1p36 LOH in NBL.

Indexed as

AnimalsChromosome DeletionChromosome DisordersChromosomes, Human, Pair 1DNA-Binding ProteinsHumansMiceNeuroblastomaN-Myc Proto-Oncogene ProteinTranscription FactorsArid1a protein, mouseDNA-Binding ProteinsMYCN protein, humanN-Myc Proto-Oncogene ProteinTranscription Factors1p36 LOHARID1ACHD5chromatin remodelershigh-risk neuroblastoma

Identifiers

PMID31940489
PMCPMC9022217
OpenAlexW3000668545

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.