Evidence map›Paper›PMID 31939742›Full record

ArticleJMIR medical informatics2020

Generating Medical Assessments Using a Neural Network Model: Algorithm Development and Validation.

Baotian Hu, Adarsha Bajracharya, Hong Yu

Abstract read
In one paragraph

Article in JMIR medical informatics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Generating Accurate Electronic Health Assessment from Medical Graph.Proceedings of the Conference on Empirical Methods in Natural Language Processing. Conference on Empirical Methods in Natural Language Processing · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Baotian HuDepartment of Computer Science, University of Massachusetts Lowell, Lowell, MA, United States.ORCID https://orcid.org/0000-0001-7490-684X
Adarsha BajracharyaDepartment of Medicine, University of Massachusetts Medical School, Worcester, MA, United States.ORCID https://orcid.org/0000-0002-1691-0506
Hong YuDepartment of Computer Science, University of Massachusetts Lowell, Lowell, MA, United States.ORCID https://orcid.org/0000-0001-9263-5035

Funding

EHR Anticoagulants PharmacovigilanceR01HL125089 · NHLBI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI YU, HONG · 2015 to 2019
$4.9M
Detecting bleeding events using EHRs for prediction in AfibR01HL137794 · NHLBI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI MCMANUS, DAVID D., YU, HONG · 2018 to 2021
$3.3M
Community Surveillance of Coronary Heart DiseaseR01HL135219 · NHLBI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GOLDBERG, ROBERT JOEL, YU, HONG · 2017 to 2020
$3.2M
Improving Suicide Prediction using NLP-Extracted Social Determinants of HealthR01MH125027 · NIMH · UNIVERSITY OF MASSACHUSETTS LOWELL · PI YU, HONG · 2020 to 2023
$3.1M
Identifying Opioid Overdose Predictors using EHRsR01DA045816 · NIDA · UNIVERSITY OF MASSACHUSETTS LOWELL · PI BECKER, WILLIAM C, LI, WENJUN · 2018 to 2022
$3.0M
Resource Curation and Evaluation for EHR Note ComprehensionR01LM012817 · NLM · UNIVERSITY OF MASSACHUSETTS LOWELL · PI YU, HONG · 2018 to 2020
$1.0M
NHLBI NIH HHS R01 HL125089NHLBI NIH HHS R01 HL135219NHLBI NIH HHS R01 HL137794NIDA NIH HHS R01 DA045816NIMH NIH HHS R01 MH125027NLM NIH HHS R01 LM012817
6 · The paper itself

Abstract

backgroundSince its inception, artificial intelligence has aimed to use computers to help make clinical diagnoses. Evidence-based medical reasoning is important for patient care. Inferring clinical diagnoses is a crucial step during the patient encounter. Previous works mainly used expert systems or machine learning-based methods to predict the International Classification of Diseases - Clinical Modification codes based on electronic health records. We report an alternative approach: inference of clinical diagnoses from patients' reported symptoms and physicians' clinical observations.

objectiveWe aimed to report a natural language processing system for generating medical assessments based on patient information described in the electronic health record (EHR) notes.

methodsWe processed EHR notes into the Subjective, Objective, Assessment, and Plan sections. We trained a neural network model for medical assessment generation (N2MAG). Our N2MAG is an innovative deep neural model that uses the Subjective and Objective sections of an EHR note to automatically generate an "expert-like" assessment of the patient. N2MAG can be trained in an end-to-end fashion and does not require feature engineering and external knowledge resources.

resultsWe evaluated N2MAG and the baseline models both quantitatively and qualitatively. Evaluated by both the Recall-Oriented Understudy for Gisting Evaluation metrics and domain experts, our results show that N2MAG outperformed the existing state-of-the-art baseline models.

conclusionsN2MAG could generate a medical assessment from the Subject and Objective section descriptions in EHR notes. Future work will assess its potential for providing clinical decision support.

Indexed as

artificial intelligencedeep neural network modelelectronic health record notemedical assessment generationnatural language processing

Identifiers

PMID31939742
PMCPMC7006435

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.