Evidence map›Paper›PMID 31938437›Full record

ArticleInternational journal of clinical and experimental pathology2018

Differential gene expression profile analysis in corticosterone-treated PC12 cells.

Jing-Jie Zhao, Ping Zhang, Li Li, Shu-Xing Chen, Allison Joines, Donald Wu, Megan Wong, Justin Shahan, Teresa Golden, Ning Wu and 1 more

Open access · greenAbstract read
In one paragraph

Article in International journal of clinical and experimental pathology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Jing-Jie ZhaoDepartment of Traditional Chinese Medicine, Beijing Friendship Hospital, Capital Medical University Beijing, China.
Ping ZhangDepartment of Research and Development, Beijing Center for Physical and Chemical Analysis Beijing, China.
Li LiDepartment of Traditional Chinese Medicine, Beijing Friendship Hospital, Capital Medical University Beijing, China.
Shu-Xing ChenDepartment of Biological Sciences, Southeastern Oklahoma State University Durant, OK 74701, USA.
Allison JoinesDepartment of Biological Sciences, Southeastern Oklahoma State University Durant, OK 74701, USA.
Donald WuDepartment of Biological Sciences, Southeastern Oklahoma State University Durant, OK 74701, USA.
Megan WongDepartment of Biological Sciences, Southeastern Oklahoma State University Durant, OK 74701, USA.
Justin ShahanDepartment of Biological Sciences, Southeastern Oklahoma State University Durant, OK 74701, USA.
Teresa GoldenDepartment of Biological Sciences, Southeastern Oklahoma State University Durant, OK 74701, USA.
Ning WuDepartment of Biological Sciences, Southeastern Oklahoma State University Durant, OK 74701, USA.
Ming-Zhen LiShenzhen Ruipuxun Academy for Stem Cell & Regenerative Medicine Shenzhen, China.
Southeastern Oklahoma State University · USBeijing Friendship Hospital · CNCapital Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Major depressive disorder (MDD) is a highly prevalent psychiatric disorder that has been ranked as the 4th leading cause of disability worldwide. Past clinical and laboratory evidence has confirmed that abnormalities of the hypothalamic-pituitary-adrenal (HPA)-axis are involved in MDD development. In this study, we took advantage of corticosterone treatment of PC12 cells as a model to identify genes regulated by HPA-axis hormones. Next-generation RNA-Seq technology was utilized to explore genome-wide differentially expressed gene profiles between control and corticosterone treated PC12 cells. 1,274 genes with at least two-fold expression level change were identified. Gene ontology analysis showed that the top enriched biological processes included response to glucocorticoid signaling, apoptosis, cell division/DNA replication, and neuron projection/axon guidance, highly consistent with phenotypes of PC12 cells treated with corticosterone. Taken together, RNA-seq data is reliable and comprehensive, thus providing a valuable resource for understanding underlying mechanisms of glucocorticoid-induced neuron malfunction.

Indexed as

Corticosteronegene expression profilingPC12 cellsRNA-Seq

Identifiers

PMID31938437
PMCPMC6958082
OpenAlexW3027334867

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.