Evidence map›Paper›PMID 31937673›Full record

ArticlemSystems2020

Network Analysis of the Papaya Orchard Virome from Two Agroecological Regions of Chiapas, Mexico.

Ricardo I Alcalá-Briseño, Kena Casarrubias-Castillo, Diana López-Ley, Karen A Garrett, Laura Silva-Rosales

Open access · goldAbstract read
In one paragraph

Article in mSystems, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
5.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 34 citations in OpenAlex.

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  9. Frontiers in microbiology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ricardo I Alcalá-BriseñoPlant Pathology Department, University of Florida, Gainesville, Florida, USA.ORCID https://orcid.org/0000-0002-7031-2195
Kena Casarrubias-CastilloDepartamento de Ingeniería Genética, Cinvestav Unidad Irapuato, Irapuato, Guanajuato, Mexico.ORCID https://orcid.org/0000-0003-1831-8642
Diana López-LeyDepartamento de Ingeniería Genética, Cinvestav Unidad Irapuato, Irapuato, Guanajuato, Mexico.
Karen A GarrettPlant Pathology Department, University of Florida, Gainesville, Florida, USA karengarrett@ufl.edu laura.silvar@cinvestav.mx.ORCID https://orcid.org/0000-0002-6578-1616
Laura Silva-RosalesDepartamento de Ingeniería Genética, Cinvestav Unidad Irapuato, Irapuato, Guanajuato, Mexico karengarrett@ufl.edu laura.silvar@cinvestav.mx.ORCID https://orcid.org/0000-0001-6679-5131
University of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The study of complex ecological interactions, such as those among host, pathogen, and vector communities, can help to explain host ranges and the emergence of novel pathogens. We evaluated the viromes of papaya orchards, including weed and insect viromes, to identify common viruses in intensive production of papaya in the Pacific Coastal Plain and the Central Depression of Chiapas, Mexico. Samples of papaya cultivar Maradol, susceptible to papaya ringspot virus (PRSV), were categorized by symptoms by local farmers (papaya ringspot symptoms, non-PRSV symptoms, or asymptomatic). These analyses revealed the presence of 61 viruses, where only 4 species were shared among both regions, 16 showed homology to known viruses, and 36 were homologous with genera including

Indexed as

bipartite networksnetwork analysisphytobiomeplant virusesviral ecologyviral metagenomics

Identifiers

PMID31937673
PMCPMC6967384
OpenAlexW2999829877

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.