Evidence map›Paper›PMID 31937114›Full record

ArticleBioTechniques2020

Simple workflow for genome and methylation analyses of ejaculated bovine spermatozoa with low sperm input.

Bradford W Daigneault, Sandeep K Rajput, George W Smith

Open access · goldAbstract read
In one paragraph

Article in BioTechniques, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Bradford W DaigneaultDepartment of Animal Science, Michigan State University, East Lansing, MI 48879, USA.
Sandeep K RajputColorado Center for Reproductive Medicine, Lone Tree, CO 80124, USA.
George W SmithDepartment of Animal Science, Michigan State University, East Lansing, MI 48879, USA.
Michigan State University · USColorado Center for Reproductive Medicine · US

Funding

Reproductive and Developmental Sciences Training Program - T32T32HD087166 · NICHD · MICHIGAN STATE UNIVERSITY · PI Ronald L Chandler, Keith E Latham · 2016 to 2026
$2.5M
NICHD NIH HHS T32 HD087166
6 · The paper itself

Abstract

We developed a simplified workflow of gDNA extraction from ejaculated bovine sperm using a low total number of sperm and a short time frame that yields high-quality DNA suitable for downstream methylation and genome analyses. These techniques have broad implications in human biomedical sciences and agriculture, including clinical diagnoses of infertility, the identification of single-nucleotide polymorphisms and aberrant methylation patterns that can impact fertility, lower embryo development and contribute to heritable disease. The methods described here provide a reliable, simplistic approach for analyzing both the genomic and epigenomic status of whole sperm ejaculates that can be adapted for laboratory diagnostics, clinical reproductive practice and basic research.

Indexed as

AnimalsCattleDNADNA MethylationGenomeMaleOligospermiaPolymerase Chain ReactionSemen AnalysisSequence Analysis, DNASpermatozoaDNAbisulfiteDNAepigenomefertilityforensicmethylationoligospermiasequencingsperm

Identifiers

PMID31937114
PMCPMC7092705
OpenAlexW2999603002

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.