Evidence map›Paper›PMID 31936820›Full record

ArticleBiomolecules2020

Structural and Functional Aspects of G-Quadruplex Aptamers Which Bind a Broad Range of Influenza A Viruses.

Anastasia A Novoseltseva, Nikita M Ivanov, Roman A Novikov, Yaroslav V Tkachev, Dmitry A Bunin, Alexandra S Gambaryan, Vadim N Tashlitsky, Alexander M Arutyunyan, Alexey M Kopylov, Elena G Zavyalova

Open access · goldAbstract read
In one paragraph

Article in Biomolecules, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Pooled it
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Anastasia A NovoseltsevaChemistry Department, Lomonosov Moscow State University, 119991 Moscow, Russia.
Nikita M IvanovChemistry Department, Lomonosov Moscow State University, 119991 Moscow, Russia.
Roman A NovikovEngelhardt Institute of Molecular Biology RAS, 119991 Moscow, Russia.
Yaroslav V TkachevEngelhardt Institute of Molecular Biology RAS, 119991 Moscow, Russia.
Dmitry A BuninChemistry Department, Lomonosov Moscow State University, 119991 Moscow, Russia.
Alexandra S GambaryanChumakov Federal Scientific Centre for Research and Development of Immune and Biological Products RAS, 108819 Moscow, Russia.
Vadim N TashlitskyChemistry Department, Lomonosov Moscow State University, 119991 Moscow, Russia.
Alexander M ArutyunyanBelozersky Research Institute of Physical Chemical Biology, Lomonosov Moscow State University, 119991 Moscow, Russia.
Alexey M KopylovChemistry Department, Lomonosov Moscow State University, 119991 Moscow, Russia.
Elena G ZavyalovaChemistry Department, Lomonosov Moscow State University, 119991 Moscow, Russia.
Lomonosov Moscow State University · RUEngelhardt Institute of Molecular Biology · RU

Funding

Russian Science Foundation 18-74-10019Российский Фонд Фундаментальных Исследований (РФФИ) 19-315-90100
6 · The paper itself

Abstract

An aptamer is a synthetic oligonucleotide with a unique spatial structure that provides specific binding to a target. To date, several aptamers to hemagglutinin of the influenza A virus have been described, which vary in affinity and strain specificity. Among them, the DNA aptamer RHA0385 is able to recognize influenza hemagglutinins with highly variable sequences. In this paper, the structure of RHA0385 was studied by circular dichroism spectroscopy, nuclear magnetic resonance, and size-exclusion chromatography, demonstrating the formation of a parallel G-quadruplex structure. Three derivatives of RHA0385 were designed in order to determine the contribution of the major loop to affinity. Shortening of the major loop from seven to three nucleotides led to stabilization of the scaffold. The affinities of the derivatives were studied by surface plasmon resonance and an enzyme-linked aptamer assay on recombinant hemagglutinins and viral particles, respectively. The alterations in the loop affected the binding to influenza hemagglutinin, but did not abolish it. Contrary to aptamer RHA0385, two of the designed aptamers were shown to be conformationally homogeneous, retaining high affinities and broad binding abilities for both recombinant hemagglutinins and whole influenza A viruses.

Indexed as

G-QuadruplexesAptamers, NucleotideBase SequenceHemagglutinin Glycoproteins, Influenza VirusHumansInfluenza A virusInfluenza, HumanPhylogenyProtein BindingAptamers, NucleotideHemagglutinin Glycoproteins, Influenza VirusaffinityDNA aptamerG-quadruplexhemagglutinininfluenza virusstructure–activity relationship

Identifiers

PMID31936820
PMCPMC7022617
OpenAlexW2999529105

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.