Evidence map›Paper›PMID 31934954›Full record

ArticleSexually transmitted diseases2020

Factors Associated With Human Immunodeficiency Virus Infections Linked in Genetic Clusters But Disconnected in Partner Tracing.

Dana K Pasquale, Irene A Doherty, William C Miller, Peter A Leone, Lynne A Sampson, Sue Lynn Ledford, Joseph Sebastian, Ann M Dennis

Open access · greenAbstract read
In one paragraph

Article in Sexually transmitted diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Contact tracing - Old models and new challenges.Infectious Disease Modelling · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Dana K Pasquale
Irene A Doherty
William C MillerDivision of Epidemiology, College of Public Health, The Ohio State University, Columbus, OH.
Peter A LeoneDivision of Infectious Diseases, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill.
Lynne A Sampson
Sue Lynn LedfordWake County Department of Health and Human Services, Raleigh, NC.
Joseph SebastianQ Lab Solutions, Morrisville, NC.
Ann M DennisDivision of Infectious Diseases, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill.
University of North Carolina at Chapel Hill · USRTI International · USDuke University · USThe Ohio State University · USWake County Human Services · US

Funding

Virology, Immunology, and Microbiology CoreP30AI050410 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVID M. MARGOLIS · 2001 to 2026
$76.9M
Re-Entry Supplement: Investigation of Oral Microbial Enzymes for the Detection and Treatment of Periodontal DiseaseUL1TR002489 · NCATS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BUSE, JOHN BERNARD, SHAHEEN, NICHOLAS J · 2018 to 2022
$48.6M
North Carolina Translational & Clinical Sciences Institute (NC TraCS)UL1TR001111 · NCATS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BUSE, JOHN BERNARD, CAREY, TIMOTHY S · 2013 to 2017
$43.9M
Training in Infectious Disease Epidemiology (TIDE)T32AI070114 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Brian W Pence · 2007 to 2026
$4.0M
Timely monitoring and response to HIV transmission networks for intensified preventionR01AI135970 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DENNIS, ANN · 2018 to 2022
$3.8M
Focused Training in Social Networks and HealthR25HD079352 · NICHD · DUKE UNIVERSITY · PI MOODY, JAMES · 2015 to 2024
$1.6M
Using Phylogenetics to Elucidate HIV Transmission Patterns and Inform PreventionK08AI112432 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DENNIS, ANN · 2014 to 2017
$697k
NCATS NIH HHS UL1 TR001111NCATS NIH HHS UL1 TR002489NIAID NIH HHS K08 AI112432NIAID NIH HHS P30 AI050410NIAID NIH HHS R01 AI135970NIAID NIH HHS T32 AI070114NICHD NIH HHS R25 HD079352
6 · The paper itself

Abstract

backgroundSuccessful partner notification can improve community-level outcomes by increasing the proportion of persons living with human immunodeficiency virus (HIV) who are linked to HIV care and virally suppressed, but it is resource intensive. Understanding where HIV transmission pathways may be undetected by routine partner notification may help improve case finding strategies.

methodsWe combined partner notification interview and HIV sequence data for persons diagnosed with HIV in Wake County, NC in 2012 to 2013 to evaluate partner contact networks among persons with HIV pol gene sequences 2% or less pairwise genetic distance. We applied a set of multivariable generalized estimating equations to identify correlates of disparate membership in genetic versus partner contact networks.

resultsIn the multivariable model, being in a male-male pair (adjusted odds ratio [AOR], 16.7; P = 0.01), chronic HIV infection status (AOR, 4.5; P < 0.01), and increasing percent genetic distance between each dyad member's HIV pol gene sequence (AOR, 8.3 per each 1% increase, P < 0.01) were all associated with persons with HIV clustering but not being identified in the partner notification network component. Having anonymous partners or other factors typically associated with risk behavior were not associated.

conclusionsBased on genetic networks, partnerships which may be stigmatized, may have occurred farther back in time or may have an intervening partner were more likely to be unobserved in the partner contact network. The HIV genetic cluster information contributes to public health understanding of HIV transmission networks in these settings where partner identifying information is not available.

Indexed as

Contact TracingAdultCluster AnalysisFemaleHIVHIV InfectionsHumansMaleMiddle AgedModels, StatisticalNorth Carolinapol Gene Products, Human Immunodeficiency VirusTransgender Personspol Gene Products, Human Immunodeficiency Virus

Identifiers

PMID31934954
PMCPMC7286358
OpenAlexW2985426810

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.