Evidence map›Paper›PMID 31933477›Full record

ArticleeLife2020

Flower-like patterns in multi-species bacterial colonies.

Liyang Xiong, Yuansheng Cao, Robert Cooper, Wouter-Jan Rappel, Jeff Hasty, Lev Tsimring

Open access · goldAbstract read
In one paragraph

Article in eLife, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
16.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
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  10. Review
  11. ISME communications · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Proliferating active matter.Nature reviews. Physics · 2023
    Review
  16. Emergence of disordered branching patterns in confined chiral nematic liquid crystals.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  17. Vertical growth dynamics of biofilms.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  18. Bridging the gap with bacterial art.FEMS microbiology letters · 2023
    Article
  19. Article
  20. Morphological instability and roughening of growing 3D bacterial colonies.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Liyang XiongDepartment of Physics, University of California, San Diego, La Jolla, United States.ORCID 0000-0002-3257-7643
Yuansheng CaoDepartment of Physics, University of California, San Diego, La Jolla, United States.ORCID 0000-0002-6857-6044
Robert CooperBioCircuits Institute, University of California, San Diego, La Jolla, United States.ORCID 0000-0003-2136-0403
Wouter-Jan RappelDepartment of Physics, University of California, San Diego, La Jolla, United States.ORCID 0000-0003-3833-7197
Jeff HastyBioCircuits Institute, University of California, San Diego, La Jolla, United States.
Lev TsimringBioCircuits Institute, University of California, San Diego, La Jolla, United States.ORCID 0000-0003-0709-3548
University of California San Diego · US

Funding

SYNTHETIC SYSTEMSP50GM085764 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WINZELER, ELIZABETH A · 2010 to 2018
$23.3M
Engineered Gene Circuits for Basic Science and BiotechnologyR01GM069811 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HASTY, JEFF M, TSIMRING, LEV S · 2004 to 2025
$13.6M
NIGMS NIH HHS P50 GM085764NIGMS NIH HHS R01 GM069811
6 · The paper itself

Abstract

Diverse interactions among species within bacterial colonies lead to intricate spatiotemporal dynamics, which can affect their growth and survival. Here, we describe the emergence of complex structures in a colony grown from mixtures of motile and non-motile bacterial species on a soft agar surface. Time-lapse imaging shows that non-motile bacteria 'hitchhike' on the motile bacteria as the latter migrate outward. The non-motile bacteria accumulate at the boundary of the colony and trigger an instability that leaves behind striking flower-like patterns. The mechanism of the front instability governing this pattern formation is elucidated by a mathematical model for the frictional motion of the colony interface, with friction depending on the local concentration of the non-motile species. A more elaborate two-dimensional phase-field model that explicitly accounts for the interplay between growth, mechanical stress from the motile species, and friction provided by the non-motile species, fully reproduces the observed flower-like patterns.

Indexed as

Microbial InteractionsAcinetobacterEscherichia coliFrictionModels, BiologicalMovementStress, MechanicalbacteriaE. colifront instabilitymotilitypattern formationphysics of living systems

Identifiers

PMID31933477
PMCPMC6959979
OpenAlexW2999239513

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.