Evidence map›Paper›PMID 31933011›Full record

ArticleThe protein journal2020

Identification of Antimicrobial Peptides from Novel Lactobacillus fermentum Strain.

Anna S Pavlova, Georgii D Ozhegov, Georgij P Arapidi, Ivan O Butenko, Eduard S Fomin, Nikolai A Alemasov, Dmitry A Afonnikov, Dina R Yarullina, Vadim T Ivanov, Vadim M Govorun and 1 more

Abstract read
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In one paragraph

Article in The protein journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Anna S PavlovaLaboratory of Molecular Genetics of Microorganisms, Institute of Fundamental Medicine and Biology, Kazan Federal University, 18 Kremlyovskaya Street, Kazan, Republic of Tatarstan, Russia, 420008.
Georgii D OzhegovLaboratory of Molecular Genetics of Microorganisms, Institute of Fundamental Medicine and Biology, Kazan Federal University, 18 Kremlyovskaya Street, Kazan, Republic of Tatarstan, Russia, 420008.
Georgij P ArapidiShemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, Miklukho-Maklaya 16/10, Moscow, Russia, 117997.
Ivan O ButenkoFederal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Malaya Pirogovskaya 1a, Moscow, Russia, 119435.
Eduard S FominSystems Biology Department, Institute of Cytology and Genetics SB RAS, 10 Lavrentyev Ave., Novosibirsk, Russia, 630090.
Nikolai A AlemasovSystems Biology Department, Institute of Cytology and Genetics SB RAS, 10 Lavrentyev Ave., Novosibirsk, Russia, 630090.
Dmitry A AfonnikovSystems Biology Department, Institute of Cytology and Genetics SB RAS, 10 Lavrentyev Ave., Novosibirsk, Russia, 630090.
Dina R YarullinaLaboratory of Molecular Genetics of Microorganisms, Institute of Fundamental Medicine and Biology, Kazan Federal University, 18 Kremlyovskaya Street, Kazan, Republic of Tatarstan, Russia, 420008.
Vadim T IvanovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, Miklukho-Maklaya 16/10, Moscow, Russia, 117997.
Vadim M GovorunFederal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Malaya Pirogovskaya 1a, Moscow, Russia, 119435.
Airat R KayumovLaboratory of Molecular Genetics of Microorganisms, Institute of Fundamental Medicine and Biology, Kazan Federal University, 18 Kremlyovskaya Street, Kazan, Republic of Tatarstan, Russia, 420008. Ajrat.Kajumov@kpfu.ru.ORCID http://orcid.org/0000-0001-7195-1557
Kazan Federal University · RUMoscow Institute of Physics and Technology · RUInstitute of Cytology and Genetics · RUInstitute of Bioorganic Chemistry · RUNovosibirsk State University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Antimicrobial peptides (AMPs) are natural antagonistic tools of many bacteria and are considered as attractive antimicrobial agents for the treatment of bacteria with multidrug resistance. Lactic acid bacteria from the gastrointestinal tract of animals and human produce various AMPs inhibiting the growth of pathogens. Here we report the isolation and identification of novel Lactobacillus fermentum strain HF-D1 from the human gut producing AMPs which prevents the growth of P. aeruginosa and S. marcescens. The active fraction of peptides was obtained from the culture liquid by precipitation at 80% saturation of ammonium sulphate. For peptides identification, the precipitate was treated with guanidine hydrochloride to desorb from proteins, separated with ultrafiltration on spin columns with 10,000 MWCO, desalted with a reversed-phase chromatography and subjected to LC-MS/MS analysis. The in silico analysis of the identified 1111 peptides by using ADAM, CAMPR3 and AMPA prediction servers led to identification of the linear peptide with highly probable antimicrobial activity and further investigation of its antibacterial activity mechanism is promising. By using the dereplication algorithm, the peptide highly similar to non-ribosomal cyclic AMPs originally isolated from Staphylococcus epidermidis has been identified. This indicates that L. fermentum HF-D1 represents a novel strain producing antimicrobial peptides targeting P. aeruginosa and S. marcescens.

Indexed as

Anti-Infective AgentsAntimicrobial Cationic PeptidesBacteriaGastrointestinal MicrobiomeHumansLimosilactobacillus fermentumAnti-Infective AgentsAntimicrobial Cationic PeptidesAntimicrobial peptidesCyclic peptidesLactobacillus fermentumMass-spectrometry

Identifiers

PMID31933011
OpenAlexW3000261961

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.