Evidence map›Paper›PMID 31931014›Full record

ArticleJournal of molecular biology2020

Cryo-EM Structure of Full-length HIV-1 Env Bound With the Fab of Antibody PG16.

Junhua Pan, Hanqin Peng, Bing Chen, Stephen C Harrison

Open access · hybridAbstract read
In one paragraph

Article in Journal of molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
6.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 64 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Junhua PanLaboratory of Molecular Medicine, Boston Children's Hospital, 3 Blackfan Circle, Boston, MA, 02115, USA.
Hanqin PengLaboratory of Molecular Medicine, Boston Children's Hospital, 3 Blackfan Circle, Boston, MA, 02115, USA.
Bing ChenLaboratory of Molecular Medicine, Boston Children's Hospital, 3 Blackfan Circle, Boston, MA, 02115, USA.
Stephen C HarrisonLaboratory of Molecular Medicine, Boston Children's Hospital, 3 Blackfan Circle, Boston, MA, 02115, USA; Howard Hughes Medical Institute, Boston Children's Hospital, 3 Blackfan Circle, Boston, MA, 02115, USA. Electronic address: harrison@crystal.harvard.edu.
Boston Children's Hospital · US

Funding

Virus biology scientific research support componentUM1AI100645 · NIAID · DUKE UNIVERSITY · PI HAYNES, BARTON F. · 2012 to 2018
$204.7M
Structure of the full-length spike protein of SARS-CoV-2 in the context of membraneR01AI147884 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI CHEN, BING · 2020 to 2024
$3.4M
Structural Basis of Coreceptor Recognition by HIV-1 Envelope SpikeR01AI141002 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI CHEN, BING · 2018 to 2022
$2.6M
Howard Hughes Medical InstituteNIAID NIH HHS R01 AI141002NIAID NIH HHS R01 AI147884NIAID NIH HHS UM1 AI100645
6 · The paper itself

Abstract

The HIV-1 envelope protein (Env) is the target of neutralizing antibodies and the template for vaccine immunogen design. The dynamic conformational equilibrium of trimeric Env influences its antigenicity and potential immunogenicity. Antibodies that bind at the trimer apex stabilize a "closed" conformation characteristic of the most difficult to neutralize isolates. A goal of vaccine development is therefore to mimic the closed conformation in a designed immunogen. A disulfide-stabilized, trimeric Env ectodomain-the "SOSIP" construct-has many of the relevant properties; it is also particularly suitable for structure determination. Some single-molecule studies have, however, suggested that the SOSIP trimer is not a good representation of Env on the surface of a virion or an infected cell. We isolated Env (fully cleaved to gp120 and gp41) from the surface of expressing cells using tagged, apex-binding Fab PG16 and determined the structure of the PG16-Env complex by cryo-EM to an overall resolution of 4.6 Å. Placing the only purification tag on the Fab ensured that the isolated Env was continuously stabilized in its closed, native conformation. The Env structure in this complex corresponds closely to the SOSIP structures determined by both x-ray crystallography and cryo-EM. Although the membrane-interacting elements are not resolved in our reconstruction, we can make inferences about the connection between ectodomain and membrane-proximal external region (MPER) by reference to the published cryo-tomography structure of an Env "spike" and the NMR structure of the MPER-transmembrane segment. We discuss these results in view of the conflicting interpretations in the literature.

Indexed as

Antibodies, NeutralizingCryoelectron Microscopyenv Gene Products, Human Immunodeficiency VirusHEK293 CellsHIV-1HIV Envelope Protein gp160HumansProtein BindingAntibodies, Neutralizingenv Gene Products, Human Immunodeficiency VirusHIV Envelope Protein gp160broadly neutralizing antibodycleaved gp160cryo-EMimmunogen design

Identifiers

PMID31931014
PMCPMC7058448
OpenAlexW3000099904

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.