Evidence map›Paper›PMID 31930600›Full record

ArticleProtein science : a publication of the Protein Society2020

Toward a structome of Acinetobacter baumannii drug targets.

Logan M Tillery, Kayleigh F Barrett, David M Dranow, Justin Craig, Roger Shek, Ian Chun, Lynn K Barrett, Isabelle Q Phan, Sandhya Subramanian, Jan Abendroth and 3 more

Open access · greenAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.1field-weighted citation impact, top 65% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. The Comparative Characterization of a HypervirulentInternational journal of molecular sciences · 2024
    Article
  3. Reconstruction and Analysis of a Genome-Scale Metabolic Model ofInternational journal of molecular sciences · 2024
    Article
  4. Article
  5. Article
  6. Characterization of anBiochemistry · 2024
    Article
  7. Recent Applications of Artificial Intelligence in Discovery of New Antibacterial Agents.Advances and applications in bioinformatics and chemistry : AABC · 2024
    Review
  8. PromisingFrontiers in immunology · 2022
    Review
  9. Toward a structome of Acinetobacter baumannii drug targets.Protein science : a publication of the Protein Society · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Logan M TilleryDepartment of Medicine, Division of Allergy and Infectious Disease, Center for Emerging and Re-emerging Infectious Disease (CERID), University of Washington, Seattle, Washington.ORCID 0000-0002-5431-3489
Kayleigh F BarrettDepartment of Medicine, Division of Allergy and Infectious Disease, Center for Emerging and Re-emerging Infectious Disease (CERID), University of Washington, Seattle, Washington.
David M DranowSeattle Structural Genomics Center for Infectious Disease, Seattle, Washington.ORCID 0000-0003-1871-2455
Justin CraigDepartment of Medicine, Division of Allergy and Infectious Disease, Center for Emerging and Re-emerging Infectious Disease (CERID), University of Washington, Seattle, Washington.
Roger ShekDepartment of Medicine, Division of Allergy and Infectious Disease, Center for Emerging and Re-emerging Infectious Disease (CERID), University of Washington, Seattle, Washington.
Ian ChunDepartment of Medicine, Division of Allergy and Infectious Disease, Center for Emerging and Re-emerging Infectious Disease (CERID), University of Washington, Seattle, Washington.
Lynn K BarrettDepartment of Medicine, Division of Allergy and Infectious Disease, Center for Emerging and Re-emerging Infectious Disease (CERID), University of Washington, Seattle, Washington.
Isabelle Q PhanSeattle Structural Genomics Center for Infectious Disease, Seattle, Washington.ORCID 0000-0001-6873-3401
Sandhya SubramanianSeattle Structural Genomics Center for Infectious Disease, Seattle, Washington.ORCID 0000-0002-5853-7498
Jan AbendrothSeattle Structural Genomics Center for Infectious Disease, Seattle, Washington.ORCID 0000-0002-8229-3243
Donald D LorimerSeattle Structural Genomics Center for Infectious Disease, Seattle, Washington.ORCID 0000-0002-9638-8083
Thomas E EdwardsSeattle Structural Genomics Center for Infectious Disease, Seattle, Washington.ORCID 0000-0002-0474-8003
Wesley C Van VoorhisDepartment of Medicine, Division of Allergy and Infectious Disease, Center for Emerging and Re-emerging Infectious Disease (CERID), University of Washington, Seattle, Washington.
Center for Infectious Disease Research · US

Funding

NIAID NIH HHS HHSN272201200025CNIAID NIH HHS HHSN272201700059C
6 · The paper itself

Abstract

Acinetobacter baumannii is well known for causing hospital-associated infections due in part to its intrinsic antibiotic resistance as well as its ability to remain viable on surfaces and resist cleaning agents. In a previous publication, A. baumannii strain AB5075 was studied by transposon mutagenesis and 438 essential gene candidates for growth on rich-medium were identified. The Seattle Structural Genomics Center for Infectious Disease entered 342 of these candidate essential genes into our pipeline for structure determination, in which 306 were successfully cloned into expression vectors, 192 were detectably expressed, 165 screened as soluble, 121 were purified, 52 crystalized, 30 provided diffraction data, and 29 structures were deposited in the Protein Data Bank. Here, we report these structures, compare them with human orthologs where applicable, and discuss their potential as drug targets for antibiotic development against A. baumannii.

Indexed as

Acinetobacter baumanniiAnti-Bacterial AgentsBacterial ProteinsCoproporphyrinogen OxidaseDrug Resistance, BacterialGenome, BacterialHumansMethionine-tRNA LigaseModels, MolecularProtein ConformationUroporphyrinogen DecarboxylaseAnti-Bacterial AgentsBacterial ProteinsCoproporphyrinogen OxidaseMethionine-tRNA LigaseUroporphyrinogen Decarboxylaseantibiotic resistanceantibiotic targetsgram-negativestructure based drug designX-ray structure

Identifiers

PMID31930600
PMCPMC7020997
OpenAlexW2999443973

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.