Evidence map›Paper›PMID 31930578›Full record

ArticleProtein science : a publication of the Protein Society2020

Structures of glyceraldehyde 3-phosphate dehydrogenase in Neisseria gonorrhoeae and Chlamydia trachomatis.

Kayleigh F Barrett, David M Dranow, Isabelle Q Phan, Samantha A Michaels, Shareef Shaheen, Edelmar D Navaluna, Justin K Craig, Logan M Tillery, Ryan Choi, Thomas E Edwards and 14 more

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. The role of tryptophan inFrontiers in cellular and infection microbiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 2 institutions in 2 countries.

Kayleigh F BarrettDepartment of Medicine, Division of Allergy and Infectious Diseases, Center for Emerging and Re-emerging Infectious Diseases (CERID), University of Washington, Seattle, Washington.
David M DranowSeattle Structural Genomics Center for Infectious Disease, Seattle, Washington.
Isabelle Q PhanSeattle Structural Genomics Center for Infectious Disease, Seattle, Washington.
Samantha A MichaelsDepartment of Medicine, Division of Allergy and Infectious Diseases, Center for Emerging and Re-emerging Infectious Diseases (CERID), University of Washington, Seattle, Washington.
Shareef ShaheenDepartment of Medicine, Division of Allergy and Infectious Diseases, Center for Emerging and Re-emerging Infectious Diseases (CERID), University of Washington, Seattle, Washington.
Edelmar D NavalunaDepartment of Medicine, Division of Allergy and Infectious Diseases, Center for Emerging and Re-emerging Infectious Diseases (CERID), University of Washington, Seattle, Washington.
Justin K CraigDepartment of Medicine, Division of Allergy and Infectious Diseases, Center for Emerging and Re-emerging Infectious Diseases (CERID), University of Washington, Seattle, Washington.
Logan M TilleryDepartment of Medicine, Division of Allergy and Infectious Diseases, Center for Emerging and Re-emerging Infectious Diseases (CERID), University of Washington, Seattle, Washington.ORCID 0000-0002-5431-3489
Ryan ChoiDepartment of Medicine, Division of Allergy and Infectious Diseases, Center for Emerging and Re-emerging Infectious Diseases (CERID), University of Washington, Seattle, Washington.
Thomas E EdwardsSeattle Structural Genomics Center for Infectious Disease, Seattle, Washington.
Deborah G ConradySeattle Structural Genomics Center for Infectious Disease, Seattle, Washington.
Jan AbendrothSeattle Structural Genomics Center for Infectious Disease, Seattle, Washington.
Peter S HoranyiSeattle Structural Genomics Center for Infectious Disease, Seattle, Washington.
Donald D LorimerSeattle Structural Genomics Center for Infectious Disease, Seattle, Washington.
Wesley C Van VoorhisDepartment of Medicine, Division of Allergy and Infectious Diseases, Center for Emerging and Re-emerging Infectious Diseases (CERID), University of Washington, Seattle, Washington.
Zhongsheng ZhangDepartment of Biochemistry, University of Washington, Seattle, Washington.
Lynn K BarrettDepartment of Medicine, Division of Allergy and Infectious Diseases, Center for Emerging and Re-emerging Infectious Diseases (CERID), University of Washington, Seattle, Washington.
Sandhya SubramanianSeattle Structural Genomics Center for Infectious Disease, Seattle, Washington.
Bart StakerSeattle Structural Genomics Center for Infectious Disease, Seattle, Washington.
Erkang FanDepartment of Biochemistry, University of Washington, Seattle, Washington.
Peter J MylerSeattle Structural Genomics Center for Infectious Disease, Seattle, Washington.
Olusegun O SogeDepartment of Medicine, Division of Allergy and Infectious Diseases, Center for Emerging and Re-emerging Infectious Diseases (CERID), University of Washington, Seattle, Washington.
Kevin HybiskeDepartment of Medicine, Division of Allergy and Infectious Diseases, Center for Emerging and Re-emerging Infectious Diseases (CERID), University of Washington, Seattle, Washington.ORCID 0000-0002-2967-3079
Kayode K OjoDepartment of Medicine, Division of Allergy and Infectious Diseases, Center for Emerging and Re-emerging Infectious Diseases (CERID), University of Washington, Seattle, Washington.ORCID 0000-0002-2007-2170
Center for Infectious Disease Research · USUniversity of Washington · US

Funding

Functional genomics for ChlamydiaR01AI126785 · NIAID · UNIVERSITY OF WASHINGTON · PI HEFTY, P SCOTT, HYBISKE, KEVIN · 2016 to 2025
$7.1M
NIAID NIH HHS HHSN272201200025CNIAID NIH HHS HHSN272201700059CNIAID NIH HHS R01 AI126785
6 · The paper itself

Abstract

Neisseria gonorrhoeae (Ng) and Chlamydia trachomatis (Ct) are the most commonly reported sexually transmitted bacteria worldwide and usually present as co-infections. Increasing resistance of Ng to currently recommended dual therapy of azithromycin and ceftriaxone presents therapeutic challenges for syndromic management of Ng-Ct co-infections. Development of a safe, effective, and inexpensive dual therapy for Ng-Ct co-infections is an effective strategy for the global control and prevention of these two most prevalent bacterial sexually transmitted infections. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is a validated drug target with two approved drugs for indications other than antibacterials. Nonetheless, any new drugs targeting GAPDH in Ng and Ct must be specific inhibitors of bacterial GAPDH that do not inhibit human GAPDH, and structural information of Ng and Ct GAPDH will aid in finding such selective inhibitors. Here, we report the X-ray crystal structures of Ng and Ct GAPDH. Analysis of the structures demonstrates significant differences in amino acid residues in the active sites of human GAPDH from those of the two bacterial enzymes suggesting design of compounds to selectively inhibit Ng and Ct is possible. We also describe an efficient in vitro assay of recombinant GAPDH enzyme activity amenable to high-throughput drug screening to aid in identifying inhibitory compounds and begin to address selectivity.

Indexed as

Chlamydia trachomatisCrystallography, X-RayDose-Response Relationship, DrugDrug Evaluation, PreclinicalEnzyme InhibitorsGlyceraldehyde-3-Phosphate DehydrogenasesHumansModels, MolecularNeisseria gonorrhoeaeRecombinant ProteinsStructure-Activity RelationshipEnzyme InhibitorsGlyceraldehyde-3-Phosphate DehydrogenasesRecombinant Proteinschlamydia trachomatisglyceraldehyde 3-phosphate dehydrogenaseNeisseria gonorrhoeaeX-ray crystal structures

Identifiers

PMID31930578
PMCPMC7020975
OpenAlexW3000670501

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.