Evidence map›Paper›PMID 31929575›Full record

ArticlePloS one2020

Molecular characterization of blaKHM-1 encoding plasmid in an Enterobacter hormaechei subsp. hoffmannii isolate from blood culture.

Kaoru Umeda, Hiromi Nakamura, Akira Fukuda, Takahiro Yamaguchi, Yuki Matsumoto, Daisuke Motooka, Shota Nakamura, Ryuji Kawahara

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Kaoru UmedaDivision of Microbiology, Osaka Institute of Public Health, Osaka, Japan.ORCID 0000-0002-7776-3239
Hiromi NakamuraDivision of Microbiology, Osaka Institute of Public Health, Osaka, Japan.
Akira FukudaDivision of Microbiology, Osaka Institute of Public Health, Osaka, Japan.
Takahiro YamaguchiDivision of Microbiology, Osaka Institute of Public Health, Osaka, Japan.
Yuki MatsumotoGenome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
Daisuke MotookaGenome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
Shota NakamuraGenome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
Ryuji KawaharaDivision of Microbiology, Osaka Institute of Public Health, Osaka, Japan.
Osaka Prefectural Institute of Public Health · JPThe University of Osaka · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

KHM-1 was first reported in 1997 in Japan as a novel metallo-β-lactamase mediated by Citrobacter freundii carrying pKHM-1 plasmid. There have been few reports in the clinical field since then. A blaKHM-1-positive Enterobacter hormaechei subsp. hoffmannii in E. cloacae complex, isolate OIPH-N069 was isolated from an inpatient blood culture in 2016. The isolate was characterized by whole-genome sequencing, comparative analysis of the blaKHM-1 encoding plasmid, antimicrobial susceptibility tests, and bacterial conjugation. OIPH-N069 was classified into ST78 of E. cloacae complex, and was multidrug resistant because of the presence of antimicrobial resistance genes in addition to blaKHM-1 on its chromosome and plasmids. blaKHM-1 was located on 136,816 bp of the IncA/C2 plasmid pN069-1, which could be transferred to different bacterial species. The backbone structure, genetic arrangement of the class 1 integron cassette, and the blaKHM-1 gene located downstream of the IncA/C2 antibiotic resistance island, ARI-A, in pN069-1 and pKHM-1 were identical. Horizontal gene transfer of the blaCTX-M-2-ISEcp1 resistance gene module only occurred with pN069-1. The study findings indicate not only the structural conservation of blaKHM-1 encoding plasmids over time and across species, but also the risk of the spread of blaKHM-1 encoding plasmids to other bacterial species and the accumulation of additional resistance genes.

Indexed as

Anti-Bacterial AgentsBacterial Proteinsbeta-LactamasesBloodBlood CultureConserved SequenceDrug Resistance, Multiple, BacterialEnterobacterEnterobacteriaceae InfectionsGene Transfer, HorizontalHumansPlasmidsWhole Genome SequencingAnti-Bacterial AgentsBacterial Proteinsbeta-Lactamases

Identifiers

PMID31929575
PMCPMC6957179
OpenAlexW3000217216

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.