Evidence map›Paper›PMID 31929179›Full record

ArticleActa crystallographica. Section F, Structural biology communications2020

The RING domain of mitochondrial E3 ubiquitin ligase 1 and its complex with Ube2D2: crystallization and X-ray diffraction.

Sang Ok Lee, Chong Kil Lee, Kyoung Seok Ryu, Seung Wook Chi

Open access · greenAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Sang Ok LeeDisease Target Structure Research Center, Division of Biomedical Research, KRIBB, Daejeon 34141, Republic of Korea.
Chong Kil LeeCollege of Pharmacy, Chungbuk National University, Cheongju 28644, Republic of Korea.
Kyoung Seok RyuProtein Structure Research Group, Korea Basic Science Institute, 162 Yeongudanji-ro, Ochang-eup, Cheongju-si, Chungcheongbuk-do 28119, Republic of Korea.ORCID 0000-0002-8422-6669
Seung Wook ChiDisease Target Structure Research Center, Division of Biomedical Research, KRIBB, Daejeon 34141, Republic of Korea.
Chungbuk National University · KRKorea Basic Science Institute · KRKorea Research Institute of Bioscience and Biotechnology · KR

Funding

Korea Basic Science Institute T39632National Research Foundation of Korea NRF-2017R1E1A1A01074403National Research Foundation of Korea NRF-2019M3A9C4076156National Research Foundation of Korea NRF-2019M3E5D4069903
6 · The paper itself

Abstract

Mitochondrial E3 ubiquitin ligase 1 (MUL1) is located in the mitochondrial outer membrane and regulates various biological processes, including apoptosis, cell growth, mitophagy and mitochondrial dynamics. The C-terminal region of MUL1 faces the cytoplasm and contains the RING domain (MUL1-RING) where the Ub~E2 thioester binds. Unlike most RING-type E3 enzymes, MUL1-RING alone does not have an additional region that recruits a substrate protein, yet is still able to ubiquitylate the substrate, the p53 protein. Nevertheless, the exact mechanism of the ubiquitylation of p53 by MUL1-RING has not yet been elucidated. In order to understand this novel ubiquitylation mechanism, it is necessary to determine the three-dimensional structures of MUL1-RING and of its complex with the cognate E2 enzyme. Here, Ube2D2 was validated as a functional E2 enzyme for the ubiquitylation of the p53 transactivation domain (p53-TAD) by MUL1-RING, and purification and crystallization processes for MUL1-RING and the MUL1-RING-Ube2D2 complex are reported.

Indexed as

RING Finger DomainsCrystallizationCrystallography, X-RayGene ExpressionHumansMitochondriaModels, MolecularProtein BindingTumor Suppressor Protein p53UbiquitinUbiquitinationUbiquitin-Conjugating EnzymesUbiquitin-Protein LigasesX-Ray DiffractionMUL1 protein, humanTumor Suppressor Protein p53UBE2D2 protein, humanUbiquitinUbiquitin-Conjugating EnzymesUbiquitin-Protein Ligasescrystallizationmitochondrial E3 ubiquitin ligase 1MUL1MUL1-RINGRING domainUbe2D2ubiquitylation

Identifiers

PMID31929179
PMCPMC6957114
OpenAlexW2998852811

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.