Evidence map›Paper›PMID 31927791›Full record

ArticleCancer medicine2020

The aberrant expression of rhythm genes affects the genome instability and regulates the cancer immunity in pan-cancer.

Jian Zhou, Xinhui Li, Minghui Zhang, Ji'nan Gong, Qi Li, Baocong Shan, Tianzhen Wang, Lei Zhang, Tongsen Zheng, Xiaobo Li

Open access · goldAbstract read
In one paragraph

Article in Cancer medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 50 citations in OpenAlex.

  1. Review
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  7. Review
  8. Article
  9. A new border for circadian rhythm gene NFIL3 in diverse fields of cancer.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2023
    Review
  10. Article
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  14. Review
  15. Frontiers in immunology · 2022
    Article
  16. Article
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  18. Review
  19. Article
  20. Stromal Expression of the Core Clock GeneFrontiers in cell and developmental biology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Jian ZhouDepartment of Pathology, Harbin Medical University, Harbin, China.
Xinhui LiCollege of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China.
Minghui ZhangDepartment of Oncology, Chifeng City Hospital, Chifeng, China.
Ji'nan GongDepartment of Pathology, Harbin Medical University, Harbin, China.
Qi LiDepartment of Pathology, Harbin Medical University, Harbin, China.
Baocong ShanDepartment of Pathology, Harbin Medical University, Harbin, China.
Tianzhen WangDepartment of Pathology, Harbin Medical University, Harbin, China.
Lei ZhangDepartment of Pathology, Harbin Medical University, Harbin, China.
Tongsen ZhengDepartment of Gastrointestinal Medical Oncology, Harbin Medical University Cancer Hospital, Harbin, China.
Xiaobo LiDepartment of Pathology, Harbin Medical University, Harbin, China.ORCID 0000-0003-1037-3903
Harbin Medical University · CNChifeng Municipal Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although emerging studies showed that certain rhythm genes regulate cancer progression, the expression and roles of the vast majority of rhythm genes in human cancer are largely unknown, and the hallmarks of cancer regulated by rhythm genes have not been detected. In this study, we detected the expression changes of rhythm genes in pan-cancer and found that almost all rhythm genes mutated in all cancer types, and their expression level was significantly altered partially due to abnormal methylation, and several rhythm genes regulate the expression of other rhythm genes in various cancer types. Furthermore, we revealed that rhythm genes are significantly enriched in genome instability and the expression of certain rhythm genes is correlated with the tumor mutation burden, microsatellite instability, and the expression of DNA damage repair genes in most of the detected cancer types. Moreover, rhythm genes are associated with the infiltration of immune cells and the efficiency of immune blockade therapy. This study provides a comprehensive understanding of the roles of rhythm genes in cancer immunity, which may provide a novel method for the diagnosis and treatment of cancer.

Indexed as

Biomarkers, TumorCircadian Rhythm Signaling Peptides and ProteinsComputational BiologyDatasets as TopicDNA DamageDNA MethylationDNA RepairDrug Resistance, NeoplasmGene Expression ProfilingGene Expression Regulation, NeoplasticGenomic InstabilityHumansImmune Checkpoint InhibitorsMicrosatellite InstabilityNeoplasm InvasivenessNeoplasmsBiomarkers, TumorCircadian Rhythm Signaling Peptides and ProteinsImmune Checkpoint Inhibitorscancer immunitycircadian rhythm genesgenome instabilitymicrosatellite instability

Identifiers

PMID31927791
PMCPMC7050078
OpenAlexW3000546656

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.