Evidence map›Paper›PMID 31926432›Full record

ArticleiScience2020

Compatibility of Site-Specific Recombination Units between Mobile Genetic Elements.

Shota Suzuki, Miki Yoshikawa, Daisuke Imamura, Kimihiro Abe, Patrick Eichenberger, Tsutomu Sato

Abstract read
In one paragraph

Article in iScience, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Mechanisms of Arsenic Interaction inInternational journal of molecular sciences · 2025
    Review
  5. Article
  6. Article
  7. Article
  8. IntrinsicFrontiers in microbiology · 2022
    Article
  9. Frontiers in microbiology · 2022
    Article
  10. Archaeal tyrosine recombinases.FEMS microbiology reviews · 2021
    Review
  11. The life cycle of SPβ and related phages.Archives of virology · 2021
    Review
  12. Distribution of Prophages in theMicroorganisms · 2021
    Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Shota SuzukiResearch Center of Micro-Nano Technology, Hosei University, Koganei, Tokyo 184-0003, Japan.
Miki YoshikawaDepartment of Frontier Bioscience, Hosei University, Koganei, Tokyo 184-8584, Japan.
Daisuke ImamuraDepartment of Frontier Bioscience, Hosei University, Koganei, Tokyo 184-8584, Japan.
Kimihiro AbeResearch Center of Micro-Nano Technology, Hosei University, Koganei, Tokyo 184-0003, Japan.
Patrick EichenbergerCenter for Genomics and Systems Biology, New York University, New York, NY 10003, USA.
Tsutomu SatoResearch Center of Micro-Nano Technology, Hosei University, Koganei, Tokyo 184-0003, Japan; Department of Frontier Bioscience, Hosei University, Koganei, Tokyo 184-8584, Japan. Electronic address: t-sato@hosei.ac.jp.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Site-specific recombination (SSR) systems are employed for transfer of mobile genetic elements (MGEs), such as lysogenic phages and integrative conjugative elements (ICEs). SSR between attP/I and attB sites is mediated by an integrase (Int) and a recombination directionality factor (RDF). The genome of Bacillus subtilis 168 contains SPβ, an active prophage, skin, a defective prophage, and ICEBs1, an integrative conjugative element. Each of these MGEs harbors the classic SSR unit attL-int-rdf-attR. Here, we demonstrate that these SSR units are all compatible and can substitute for one another. Specifically, when SPβ is turned into a defective prophage by deletion of its SSR unit, introduction of the SSR unit of skin or ICE converts it back to an active prophage. We also identified closely related prophages with distinct SSR units that control developmentally regulated gene rearrangements of kamA (L-lysine 2,3-aminomutase). These results suggest that SSR units are interchangeable components of MGEs.

Indexed as

GeneticsMicrobial GeneticsMicrobiologyMolecular Genetics

Identifiers

PMID31926432
PMCPMC6957869

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.