Evidence map›Paper›PMID 31925564›Full record

ArticleMetabolomics : Official journal of the Metabolomic Society2020

DESI-MSI and METASPACE indicates lipid abnormalities and altered mitochondrial membrane components in diabetic renal proximal tubules.

Guanshi Zhang, Jialing Zhang, Rachel J DeHoog, Subramaniam Pennathur, Christopher R Anderton, Manjeri A Venkatachalam, Theodore Alexandrov, Livia S Eberlin, Kumar Sharma

Open access · greenAbstract read
In one paragraph

Article in Metabolomics : Official journal of the Metabolomic Society, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 56 citations in OpenAlex.

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  14. Molecular pathways that drive diabetic kidney disease.The Journal of clinical investigation · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Guanshi ZhangCenter for Renal Precision Medicine, Division of Nephrology, Department of Medicine, The University of Texas Health Science Center at San Antonio, San Antonio, TX, USA.
Jialing ZhangDepartment of Chemistry, The University of Texas at Austin, Austin, TX, USA.
Rachel J DeHoogDepartment of Chemistry, The University of Texas at Austin, Austin, TX, USA.
Subramaniam PennathurDivision of Nephrology, Department of Internal Medicine, University of Michigan, Ann Arbor, MI, USA.
Christopher R AndertonEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA.
Manjeri A VenkatachalamDepartment of Pathology, University of Texas Health San Antonio, San Antonio, TX, USA.
Theodore AlexandrovStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Livia S EberlinDepartment of Chemistry, The University of Texas at Austin, Austin, TX, USA.
Kumar SharmaCenter for Renal Precision Medicine, Division of Nephrology, Department of Medicine, The University of Texas Health Science Center at San Antonio, San Antonio, TX, USA. sharmak3@uthscsa.edu.ORCID 0000-0002-7550-8525
The University of Texas at Austin · USThe University of Texas Health Science Center at San Antonio · USPacific Northwest National Laboratory · USUniversity of California San Diego · USUniversity of Michigan · US

Funding

Pilot and Feasibility (P and F) ProgramP30DK089503 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Karen Eileen Peterson · 2010 to 2026
$20.3M
Integrated Systems Biology Approach to Diabetic Microvascular ComplicationsR24DK082841 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ABCOUWER, STEVEN F, BROSIUS, FRANK C · 2008 to 2020
$13.1M
University of Michigan O'Brien Kidney Translational Core CenterP30DK081943 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PENNATHUR, SUBRAMANIAM · 2008 to 2022
$12.9M
Spatial Multi-Omics to Profile Metabolic Pathways for Kidney DiseaseU01DK114920 · NIDDK · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Christopher R Anderton, Kumar Sharma · 2022 to 2026
$3.9M
Spatial Metabolomics for Human KidneysUH3DK114920 · NIDDK · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI SHARMA, KUMAR · 2019 to 2021
$2.7M
Pathogenesis of tubule atrophy and failed recovery after acute kidney injuryR01DK104128 · NIDDK · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI VENKATACHALAM, MANJERI A · 2016 to 2019
$1.4M
Spatial Metabolomics for Human KidneysUG3DK114920 · NIDDK · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI SHARMA, KUMAR · 2017 to 2018
$869k
Mitochondrial Recovery after Acute Kidney Injury Needs Ribonucleotide ReductaseR01DK119693 · NIDDK · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI VENKATACHALAM, MANJERI A · 2020 to 2022
$696k
Mass Spectrometry Imaging for Clinical Diagnosis and Prognosis of Human CancersR00CA190783 · NCI · UNIVERSITY OF TEXAS AT AUSTIN · PI SCHIAVINATO EBERLIN, LIVIA · 2016 to 2018
$677k
NCI NIH HHS R00 CA190783NIDDK NIH HHS 5R24DK082841-08NIDDK NIH HHS P30 DK081943NIDDK NIH HHS P30 DK089503NIDDK NIH HHS R01 DK104128NIDDK NIH HHS R01 DK119693NIDDK NIH HHS R24 DK082841NIDDK NIH HHS U01 DK114920NIDDK NIH HHS UG3 DK114920NIDDK NIH HHS UH3 DK114920
6 · The paper itself

Abstract

introductionDiabetic kidney disease (DKD) is the most prevalent complication in diabetic patients, which contributes to high morbidity and mortality. Urine and plasma metabolomics studies have been demonstrated to provide valuable insights for DKD. However, limited information on spatial distributions of metabolites in kidney tissues have been reported.

objectivesIn this work, we employed an ambient desorption electrospray ionization-mass spectrometry imaging (DESI-MSI) coupled to a novel bioinformatics platform (METASPACE) to characterize the metabolome in a mouse model of DKD.

methodsDESI-MSI was performed for spatial untargeted metabolomics analysis in kidneys of mouse models (F1 C57BL/6J-Ins2Akita male mice at 17 weeks of age) of type 1 diabetes (T1D, n = 5) and heathy controls (n = 6).

resultsMultivariate analyses (i.e., PCA and PLS-DA (a 2000 permutation test: P < 0.001)) showed clearly separated clusters for the two groups of mice on the basis of 878 measured m/z's in kidney cortical tissues. Specifically, mice with T1D had increased relative abundances of pseudouridine, accumulation of free polyunsaturated fatty acids (PUFAs), and decreased relative abundances of cardiolipins in cortical proximal tubules when compared with healthy controls.

conclusionResults from the current study support potential key roles of pseudouridine and cardiolipins for maintaining normal RNA structure and normal mitochondrial function, respectively, in cortical proximal tubules with DKD. DESI-MSI technology coupled with METASPACE could serve as powerful new tools to provide insight on fundamental pathways in DKD.

Indexed as

MetabolomeAnimalsCardiolipinsComputational BiologyDiabetic NephropathiesFatty Acids, Omega-3Kidney Tubules, ProximalMaleMetabolic Networks and PathwaysMiceMice, Inbred C57BLMitochondrial MembranesPseudouridineSpectrometry, Mass, Electrospray IonizationCardiolipinsFatty Acids, Omega-3PseudouridineDESI-MSIDiabetic kidney diseaseLipid metabolismRenal proximal tubule

Identifiers

PMID31925564
PMCPMC7301343
OpenAlexW3000250332

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.