Evidence map›Paper›PMID 31925438›Full record

ArticleNucleic acids research2020

Species-specific recruitment of transcription factors dictates toxin expression.

Julian Trouillon, Erwin Sentausa, Michel Ragno, Mylène Robert-Genthon, Stephen Lory, Ina Attrée, Sylvie Elsen

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 39 citations in OpenAlex.

  1. An XRE-type regulator inMicrobiology spectrum · 2026
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  6. Comparative genomics ofJournal of bacteriology · 2025
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  7. AvirulentmicroLife · 2025
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  8. Novel Fosfomycin Resistance Mechanism inAntibiotics (Basel, Switzerland) · 2024
    Article
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  10. mBio · 2024
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. ExlA: A New Contributor toFrontiers in cellular and infection microbiology · 2022
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Julian TrouillonUniversité Grenoble Alpes, CNRS ERL5261, CEA-IRIG-BCI, INSERM UMR1036, Grenoble 38000, France.
Erwin SentausaUniversité Grenoble Alpes, CNRS ERL5261, CEA-IRIG-BCI, INSERM UMR1036, Grenoble 38000, France.
Michel RagnoUniversité Grenoble Alpes, CNRS ERL5261, CEA-IRIG-BCI, INSERM UMR1036, Grenoble 38000, France.
Mylène Robert-GenthonUniversité Grenoble Alpes, CNRS ERL5261, CEA-IRIG-BCI, INSERM UMR1036, Grenoble 38000, France.
Stephen LoryDepartment of Microbiology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Ina AttréeUniversité Grenoble Alpes, CNRS ERL5261, CEA-IRIG-BCI, INSERM UMR1036, Grenoble 38000, France.
Sylvie ElsenUniversité Grenoble Alpes, CNRS ERL5261, CEA-IRIG-BCI, INSERM UMR1036, Grenoble 38000, France.
Centre National de la Recherche Scientifique · FRHarvard University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tight and coordinate regulation of virulence determinants is essential for bacterial biology and involves dynamic shaping of transcriptional regulatory networks during evolution. The horizontally transferred two-partner secretion system ExlB-ExlA is instrumental in the virulence of different Pseudomonas species, ranging from soil- and plant-dwelling biocontrol agents to the major human pathogen Pseudomonas aeruginosa. Here, we identify a Cro/CI-like repressor, named ErfA, which together with Vfr, a CRP-like activator, controls exlBA expression in P. aeruginosa. The characterization of ErfA regulon across P. aeruginosa subfamilies revealed a second conserved target, the ergAB operon, with functions unrelated to virulence. To gain insights into this functional dichotomy, we defined the pan-regulon of ErfA in several Pseudomonas species and found ergAB as the sole conserved target of ErfA. The analysis of 446 exlBA promoter sequences from all exlBA+ genomes revealed a wide variety of regulatory sequences, as ErfA- and Vfr-binding sites were found to have evolved specifically in P. aeruginosa and nearly each species carries different regulatory sequences for this operon. We propose that the emergence of different regulatory cis-elements in the promoters of horizontally transferred genes is an example of plasticity of regulatory networks evolving to provide an adapted response in each individual niche.

Indexed as

A549 CellsBacterial ProteinsBacterial ToxinsBase SequenceGene Expression Regulation, BacterialHumansOperonPromoter Regions, GeneticProtein BindingPseudomonasRepressor ProteinsSpecies SpecificityTranscription FactorsVirulenceBacterial ProteinsBacterial ToxinsRepressor ProteinsTranscription Factors

Identifiers

PMID31925438
PMCPMC7049718
OpenAlexW3000179994

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.