Evidence map›Paper›PMID 31925429›Full record

ArticleNucleic acids research2020

Structural basis for osmotic regulation of the DNA binding properties of H-NS proteins.

Liang Qin, Fredj Ben Bdira, Yann G J Sterckx, Alexander N Volkov, Jocelyne Vreede, Gabriele Giachin, Peter van Schaik, Marcellus Ubbink, Remus T Dame

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 45 citations in OpenAlex.

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  11. Quantitative Determination of DNA Bridging Efficiency of Chromatin Proteins.Methods in molecular biology (Clifton, N.J.) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Liang QinDepartment of Macromolecular Biochemistry, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC Leiden, the Netherlands.
Fredj Ben BdiraDepartment of Macromolecular Biochemistry, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC Leiden, the Netherlands.
Yann G J SterckxLaboratory of Medical Biochemistry, University of Antwerp, Campus Drie Eiken, University Square 1, 2610 Wilrijk, Belgium.
Alexander N VolkovVIB-VUB Structural Biology Research Center, Pleinlaan 2, 1050 Brussels, Belgium.
Jocelyne VreedeDepartment of Computational Chemistry, Van't Hoff Institute for Molecular Sciences, University of Amsterdam Science Park 904, 1098 XH Amsterdam, the Netherlands.
Gabriele GiachinStructural Biology Group, European Synchrotron Radiation Facility (ESRF), Grenoble, France.
Peter van SchaikDepartment of Macromolecular Biochemistry, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC Leiden, the Netherlands.
Marcellus UbbinkDepartment of Macromolecular Biochemistry, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC Leiden, the Netherlands.
Remus T DameDepartment of Macromolecular Biochemistry, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC Leiden, the Netherlands.
Leiden University · NLEuropean Synchrotron Radiation Facility · FRUniversity of Amsterdam · NLUniversity of Antwerp · BEVIB-VUB Center for Structural Biology · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

H-NS proteins act as osmotic sensors translating changes in osmolarity into altered DNA binding properties, thus, regulating enterobacterial genome organization and genes transcription. The molecular mechanism underlying the switching process and its conservation among H-NS family members remains elusive. Here, we focus on the H-NS family protein MvaT from Pseudomonas aeruginosa and demonstrate experimentally that its protomer exists in two different conformations, corresponding to two different functional states. In the half-opened state (dominant at low salt) the protein forms filaments along DNA, in the fully opened state (dominant at high salt) the protein bridges DNA. This switching is a direct effect of ionic strength on electrostatic interactions between the oppositely charged DNA binding and N-terminal domains of MvaT. The asymmetric charge distribution and intramolecular interactions are conserved among the H-NS family of proteins. Therefore, our study establishes a general paradigm for the molecular mechanistic basis of the osmosensitivity of H-NS proteins.

Indexed as

Bacterial ProteinsDNADNA-Binding ProteinsGene Expression Regulation, BacterialGenome, BacterialOsmolar ConcentrationProtein DomainsPseudomonas aeruginosaTrans-ActivatorsBacterial ProteinsDNADNA-Binding ProteinsH-NS protein, bacteriaMvaT protein, PseudomonasTrans-Activators

Identifiers

PMID31925429
PMCPMC7039000
OpenAlexW2998993230

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.