Evidence map›Paper›PMID 31925330›Full record

ArticleCommunications biology2020

Structure and dynamics of the E. coli chemotaxis core signaling complex by cryo-electron tomography and molecular simulations.

C Keith Cassidy, Benjamin A Himes, Dapeng Sun, Jun Ma, Gongpu Zhao, John S Parkinson, Phillip J Stansfeld, Zaida Luthey-Schulten, Peijun Zhang

Abstract read
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Microorganisms · 2025
    Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Bacterial chemoreceptor signaling complexes control kinase activity by stabilizing the catalytic domain of CheA.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  17. Bacterial chemotaxis in human diseases.Trends in microbiology · 2023
    Review
  18. Recent structural advances in bacterial chemotaxis signalling.Current opinion in structural biology · 2023
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

C Keith CassidyDepartment of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK. keith.cassidy@bioch.ox.ac.uk.ORCID http://orcid.org/0000-0001-8106-1187
Benjamin A HimesDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15260, USA.
Dapeng SunDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15260, USA.ORCID http://orcid.org/0000-0003-0220-8844
Jun MaDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15260, USA.
Gongpu ZhaoDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15260, USA.ORCID http://orcid.org/0000-0003-0330-1581
John S ParkinsonSchool of Biological Sciences, University of Utah, Salt Lake City, UT, 84112, USA.ORCID http://orcid.org/0000-0001-8788-7844
Phillip J StansfeldDepartment of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK.ORCID http://orcid.org/0000-0001-8800-7669
Zaida Luthey-SchultenDepartment of Physics and Beckman Institute, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.ORCID http://orcid.org/0000-0001-9749-8367
Peijun ZhangDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15260, USA. peijun@strubi.ox.ac.uk.ORCID http://orcid.org/0000-0003-1803-691X

Funding

WHOLE CELL SIMULATIONP41GM104601 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI TAJKHORSHID, EMAD · 2012 to 2021
$19.0M
Intracellular Signaling by Bacterial ChemoreceptorsR01GM019559 · NIGMS · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI JOHN S PARKINSON · 1985 to 2026
$12.3M
Structure and function of membrane receptor signaling complex in bacterial chemotR01GM085043 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ZHANG, PEIJUN · 2009 to 2013
$1.4M
INTRACELLULAR SIGNALING BY BACTERIAL CHEMORECEPTORSR37GM019559 · NIGMS · UNIVERSITY OF UTAH · PI PARKINSON, JOHN S · 1992 to 2001
$806k
Biotechnology and Biological Sciences Research Council BB/P01948X/1Biotechnology and Biological Sciences Research Council BB/R002517/1Biotechnology and Biological Sciences Research Council BB/S003339/1Medical Research Council MR/S009213/1NIGMS NIH HHS P41 GM104601NIGMS NIH HHS R01 GM019559NIGMS NIH HHS R01 GM085043NIGMS NIH HHS R37 GM019559Wellcome TrustWellcome Trust 206422/Z/17/Z
6 · The paper itself

Abstract

To enable the processing of chemical gradients, chemotactic bacteria possess large arrays of transmembrane chemoreceptors, the histidine kinase CheA, and the adaptor protein CheW, organized as coupled core-signaling units (CSU). Despite decades of study, important questions surrounding the molecular mechanisms of sensory signal transduction remain unresolved, owing especially to the lack of a high-resolution CSU structure. Here, we use cryo-electron tomography and sub-tomogram averaging to determine a structure of the Escherichia coli CSU at sub-nanometer resolution. Based on our experimental data, we use molecular simulations to construct an atomistic model of the CSU, enabling a detailed characterization of CheA conformational dynamics in its native structural context. We identify multiple, distinct conformations of the critical P4 domain as well as asymmetries in the localization of the P3 bundle, offering several novel insights into the CheA signaling mechanism.

Indexed as

Electron Microscope TomographyMolecular ConformationMolecular Dynamics SimulationAdaptor Proteins, Signal TransducingChemotaxisEscherichia coliEscherichia coli ProteinsAdaptor Proteins, Signal TransducingEscherichia coli Proteins

Identifiers

PMID31925330
PMCPMC6954272

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.