Evidence map›Paper›PMID 31924621›Full record

ArticleApplied and environmental microbiology2020

Metagenomics as a Public Health Risk Assessment Tool in a Study of Natural Creek Sediments Influenced by Agricultural and Livestock Runoff: Potential and Limitations.

Brittany Suttner, Eric R Johnston, Luis H Orellana, Luis M Rodriguez-R, Janet K Hatt, Diana Carychao, Michelle Q Carter, Michael B Cooley, Konstantinos T Konstantinidis

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
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  12. Article
  13. Antibiotic Resistance in Recreational Waters: State of the Science.International journal of environmental research and public health · 2020
    Review
  14. Metagenomics as a Tool To Monitor Reclaimed-Water Quality.Applied and environmental microbiology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Brittany SuttnerSchool of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA.ORCID 0000-0001-9004-4354
Eric R JohnstonSchool of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA.
Luis H OrellanaSchool of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA.
Luis M Rodriguez-RSchool of Biological Sciences, Center for Bioinformatics and Computational Genomics, Georgia Institute of Technology, Atlanta, Georgia, USA.ORCID 0000-0001-7603-3093
Janet K HattSchool of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA.
Diana CarychaoProduce Safety and Microbiology, USDA-ARS Western Regional Research Center, Albany, California, USA.
Michelle Q CarterProduce Safety and Microbiology, USDA-ARS Western Regional Research Center, Albany, California, USA.
Michael B CooleyProduce Safety and Microbiology, USDA-ARS Western Regional Research Center, Albany, California, USA.
Konstantinos T KonstantinidisSchool of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA kostas@ce.gatech.edu.
Georgia Institute of Technology · USWestern Regional Research Center · USOak Ridge National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Little is known about the public health risks associated with natural creek sediments that are affected by runoff and fecal pollution from agricultural and livestock practices. For instance, the persistence of foodborne pathogens such as Shiga toxin-producing

Indexed as

MetagenomicsAgricultureAnimal HusbandryAnimalsCaliforniaGeologic SedimentsLivestockPublic HealthRisk AssessmentRiversShiga-Toxigenic Escherichia coliWater Pollutionantibiotic resistancemetagenomicsmicrobial ecologymicrobial source trackingsediment microbial communities

Identifiers

PMID31924621
PMCPMC7054096
OpenAlexW2999177160

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.