Evidence map›Paper›PMID 31924616›Full record

ArticleApplied and environmental microbiology2020

Microbial Community Distribution and Core Microbiome in Successive Wound Grades of Individuals with Diabetic Foot Ulcers.

Apoorva Jnana, Vigneshwaran Muthuraman, Vinay Koshy Varghese, Sanjiban Chakrabarty, Thokur Sreepathy Murali, Lingadakai Ramachandra, Kallya Rajgopal Shenoy, Gabriel Sunil Rodrigues, Seetharam Shiva Prasad, Dhananjaya Dendukuri and 5 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT05770856 (Clinical Metagenomic Next-Generation Sequencing for Microbial Infections in Trauma), which is not on this map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05770856 completednot on this mapstarted 2023, after this paper: background citation

Clinical Metagenomic Next-Generation Sequencing for Microbial Infections in Trauma

TypeobservationalSponsorCentre Hospitalier Intercommunal de Toulon La Seyne sur MerRan2023 to 2023Enrolled25ConditionsFractures, Bone, InfectionsArmsMetagenomic sequencing
3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 51 citations in OpenAlex.

  1. Trial
  2. Article
  3. A Retrospective Study of Infections and Antibiotic Susceptibility in Diabetic Foot Ulcers.Diabetes therapy : research, treatment and education of diabetes and related disorders · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Review
  14. Science advances · 2024
    Article
  15. Direct metagenomics investigation of non-surgical hard-to-heal wounds: a review.Annals of clinical microbiology and antimicrobials · 2024
    Review
  16. Article
  17. Article
  18. Review
  19. Antibiotics (Basel, Switzerland) · 2023
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Apoorva JnanaDepartment of Biotechnology, Manipal School of Life Sciences, Manipal Academy of Higher Education, Manipal, Karnataka, India.
Vigneshwaran MuthuramanDepartment of Biotechnology, Manipal School of Life Sciences, Manipal Academy of Higher Education, Manipal, Karnataka, India.
Vinay Koshy VargheseDepartment of Cell and Molecular Biology, Manipal School of Life Sciences, Manipal Academy of Higher Education, Manipal, Karnataka, India.
Sanjiban ChakrabartyDepartment of Cell and Molecular Biology, Manipal School of Life Sciences, Manipal Academy of Higher Education, Manipal, Karnataka, India.
Thokur Sreepathy MuraliDepartment of Biotechnology, Manipal School of Life Sciences, Manipal Academy of Higher Education, Manipal, Karnataka, India.
Lingadakai RamachandraDepartment of Surgery, Kasturba Medical College, Manipal Academy of Higher Education, Manipal, Karnataka, India.
Kallya Rajgopal ShenoyDepartment of Surgery, Kasturba Medical College, Manipal Academy of Higher Education, Manipal, Karnataka, India.
Gabriel Sunil RodriguesDepartment of Surgery, Kasturba Medical College, Manipal Academy of Higher Education, Manipal, Karnataka, India.
Seetharam Shiva PrasadDepartment of Surgery, Kasturba Medical College, Manipal Academy of Higher Education, Manipal, Karnataka, India.
Dhananjaya DendukuriAchira Laboratories Pvt. Ltd., Bangalore, Karnataka, India.
Andreas MorschhauserFraunhofer Institute for Electronic Nano Systems, Chemnitz, Germany.
Joerg NestlerBiFlow Systems GmbH, Chemnitz, Germany.
Harald PeterFraunhofer Institute for Cell Therapy and Immunology, Branch Bioanalytics and Bioprocesses IZI-BB, Potsdam, Germany.
Frank F BierFraunhofer Institute for Cell Therapy and Immunology, Branch Bioanalytics and Bioprocesses IZI-BB, Potsdam, Germany.
Kapaettu SatyamoorthyDepartment of Cell and Molecular Biology, Manipal School of Life Sciences, Manipal Academy of Higher Education, Manipal, Karnataka, India ksatyamoorthy@manipal.edu.
Manipal Academy of Higher Education · INFraunhofer Institute for Cell Therapy and Immunology · DEKasturba Medical College, Manipal · INFraunhofer Institute for Electronic Nano Systems · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Diabetic foot ulcer (DFU) is a major complication of diabetes with high morbidity and mortality rates. The pathogenesis of DFUs is governed by a complex milieu of environmental and host factors. The empirical treatment is initially based on wound severity since culturing and profiling the antibiotic sensitivity of wound-associated microbes is time-consuming. Hence, a thorough and rapid analysis of the microbial landscape is a major requirement toward devising evidence-based interventions. Toward this, 122 wound (100 diabetic and 22 nondiabetic) samples were sampled for their bacterial community structure using both culture-based and next-generation 16S rRNA-based metagenomics approach. Both the approaches showed that the Gram-negative microbes were more abundant in the wound microbiome. The core microbiome consisted of bacterial genera, including

Indexed as

MicrobiotaAdultAgedAged, 80 and overBacteriaDiabetic FootFemaleHumansMaleMiddle AgedRNA, BacterialRNA, Ribosomal, 16SSex FactorsYoung AdultRNA, BacterialRNA, Ribosomal, 16S16S metagenomicsantibiotic resistancediabetic foot ulcerwound microbiome

Identifiers

PMID31924616
PMCPMC7054093
OpenAlexW3000408070

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.