Evidence map›Paper›PMID 31923235›Full record

ArticlePloS one2020

Spectral characteristics of urine from patients with end-stage kidney disease analyzed using Raman Chemometric Urinalysis (Rametrix).

Ryan S Senger, Meaghan Sullivan, Austin Gouldin, Stephanie Lundgren, Kristen Merrifield, Caitlin Steen, Emily Baker, Tommy Vu, Ben Agnor, Gabrielle Martinez and 11 more

Abstract readValidation Study
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Ryan S SengerDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.ORCID 0000-0002-2450-6693
Meaghan SullivanDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.
Austin GouldinDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.
Stephanie LundgrenDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.
Kristen MerrifieldDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.
Caitlin SteenDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.
Emily BakerDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.
Tommy VuDepartment of Chemical Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.
Ben AgnorDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.
Gabrielle MartinezDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.ORCID 0000-0001-7538-318X
Hana CooganDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.
William CarswellDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.
Varun KavuruVeteran Affairs Medical Center, Salem, Virginia, United States of America.ORCID 0000-0001-8792-8044
Lampros KarageorgeVeteran Affairs Medical Center, Salem, Virginia, United States of America.
Devasmita DevVeteran Affairs Medical Center, Salem, Virginia, United States of America.
Pang DuDepartment of Statistics, Virginia Tech, Blacksburg, Virginia, United States of America.ORCID 0000-0003-1365-4831
Allan SklarLewis-Gale Medical Center, Salem, Virginia, United States of America.
James PirkleDepartment of Internal Medicine-Nephrology, Wake Forest University Baptist Medical Center, Winston-Salem, North Carolina, United States of America.
Susan GuelichValley Nephrology Associates, Roanoke, Virginia, United States of America.
Giuseppe OrlandoDepartment of Surgical Sciences-Transplant, Wake Forest University Baptist Medical Center, Winston-Salem, North Carolina, United States of America.
John L RobertsonDialySenors, Inc., Blacksburg, Virginia, United States of America.

Funding

EPA EP-D-15-015
6 · The paper itself

Abstract

Raman Chemometric Urinalysis (RametrixTM) was used to discern differences in Raman spectra from (i) 362 urine specimens from patients receiving peritoneal dialysis (PD) therapy for end-stage kidney disease (ESKD), (ii) 395 spent dialysate specimens from those PD therapies, and (iii) 235 urine specimens from healthy human volunteers. RametrixTM analysis includes spectral processing (e.g., truncation, baselining, and vector normalization); principal component analysis (PCA); statistical analyses (ANOVA and pairwise comparisons); discriminant analysis of principal components (DAPC); and testing DAPC models using a leave-one-out build/test validation procedure. Results showed distinct and statistically significant differences between the three types of specimens mentioned above. Further, when introducing "unknown" specimens, RametrixTM was able to identify the type of specimen (as PD patient urine or spent dialysate) with better than 98% accuracy, sensitivity, and specificity. RametrixTM was able to identify "unknown" urine specimens as from PD patients or healthy human volunteers with better than 96% accuracy (with better than 97% sensitivity and 94% specificity). This demonstrates that an entire Raman spectrum of a urine or spent dialysate specimen can be used to determine its identity or the presence of ESKD by the donor.

Indexed as

AdolescentAdultAgedAged, 80 and overData AccuracyDialysis SolutionsFemaleHealthy VolunteersHumansKidney Failure, ChronicMaleMiddle AgedPeritoneal DialysisPrincipal Component AnalysisSensitivity and SpecificitySpectrum Analysis, RamanDialysis Solutions

Identifiers

PMID31923235
PMCPMC6954047

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.